Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2152 ATGATGTTAGGTACAAGACCATTTAACACACAACACAAAGGTATCAACAAATACGCGTTCTTTGAATTCCACACACAAAACAAAACCCAGAAAACAACATCAATAAATGAACCAATATTAAACCTCAACTCAACCTATGAACCCAAACCAAACCATATCAAAAACAATCTCAACATGTCATCATATTCAAATCCAACCTTAACAACACTAATCATAATCCTCCTCACAACAATTTCCTTCACCTTAATCCCAAAAACAAATTCCCAACAAGAATACGTAAACAACCAACAACTAGATTGTTATAACACATACAATTCAACCTTAGGCAACATTTGCAACAGCATCAATTCATGTCAATCATATCTCACATTCAAATCAACACCAAATTACAACACACCCTCTTCCATTTCAAATCTCCTCAACACAACACCTTCCCTCATCTCACAATCCAACAACATCCCCACCGTCCAATCATTCCCCTTAGACACAATCACAACCGTTCCTGTTAACTGTTCTTGTTCAGGTAACAAAAACTACTATCAACATAACACTACCTACACTTTGAAAACCCTCGGTGAAACATATTTCACCGTCGCTAATATTACTTACCAAGCTTTAACAACTTGTCAAGCTCTTATTGCTCAGAATCCTTCTCATGCTGTTCGAGATCTCAATCCTGGTGACAAGATTACGGTTCCTTTGAGATGTGCTTGTCCCACGAAAAAACAGAGTGATGAAGGATTCAAGTATCTTCTCACATATTTGGTTTCTGAAGGTGAATCAGTTTCTTCCATTGCTGATATTTTTGGAGCTGATCTACAAAGTGTTTATGAAGCTAATGAACTTTCTTCAACTTCCATAATTTACTACTTCACACCACTTTTAATCCCTCTCAAAAATGAACCACCGAAAAAAATCATAAAACAAGCTTCACCGCCGGAGACGGTGGAGCCACCGGATTCCGGTGGTTCATCCTCTTCCAAGAAATGGGTCATCGTCGGTGTCGCGGTTGGAGTTGTCGTTTTGATTCTGGTAGGTCTTGCTCTGTTTTTCCTCTGTTTCCGGCGACGAAAGCAACCGGAGCTACCACCGTCGACGGTTAAGAAATTTTCAGATTCTGATACGAAAAAGATTTCAGATTTTAATTCCACAACAACAAATACTCAATCTTGGTCCCTTTCTTCTGAGGGGATTCGATATGCGGTTGATTCGTTGACTAAGTATAAATATGAAGAATTGCAAAATGCTACAAATTTTTTCAGTGAAGAGAATAAGATTAAAGGTTCTGTTTATAGAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGATTCTTAAAGGTGATGTTTCATCTGAGATAAACATTTTGAAGAGAATTAATCATGCTAATATTATAAGATTATCTGGTTTTTGTGTCTACAAAGGTAACACTTATCTTGTTTATGAATTTGCTGAGAATAAATCTCTTAATGATTGGCTTCACATTGAGAAAGTGAAATCTAATTCTATGTTTTTGAGTTGGTTTCATAGAGTTCAAATTGCTCATAATGTAGCTGATGCACTTAATTATCTTCATAATTATGCTAATCCACCACATGTTCACAAGAATTTGAAAAGTGGTAATGTTCTTTTAGATAGAAATTTTAGAGGTAAAGTTTCAAATTTTGGTTTAGCAAGAGTTATGGAGAATGAAGGTGAAGAAGAAGGGTTTCAATTAACAAGACATGTAATAGGAACACAAGGTTATATGGCACCTGAGTATATTGAAAATGGTTTAATTACTCCAAAAATGGATGTTTTTGCATTTGGTGTTGTGATTCTTGAGCTTCTTTCTGGTAGAGAAGTTGTTAATGATGATAAACTTTTGTCTTCAAGTTTTGAGCAAGTTTTTGAAGGGGAAAATGTTAGAGAGAAACTTAGAGGTTTTATGGATCCAAATTTGAGAGATGAATATCCTTTGGAACTTGCTTATTCAATGGCTGAGATTGCTAAAAGATGTGTTGCTAAAGATCTTAATTTAAGACCTAATGTTTCTGAGGTTTTTATGGTTTTGTCTAAGATTCAATCTTCTACATTGGATTGGGATCCTTCTGATGAATTTGAACGGTCTAGATCTGGTAGTCATGTTTCTGATAGTAAATATTTTAGTGCCAATGTATAA 2160 0.3546 MMLGTRPFNTQHKGINKYAFFEFHTQNKTQKTTSINEPILNLNSTYEPKPNHIKNNLNMSSYSNPTLTTLIIILLTTISFTLIPKTNSQQEYVNNQQLDCYNTYNSTLGNICNSINSCQSYLTFKSTPNYNTPSSISNLLNTTPSLISQSNNIPTVQSFPLDTITTVPVNCSCSGNKNYYQHNTTYTLKTLGETYFTVANITYQALTTCQALIAQNPSHAVRDLNPGDKITVPLRCACPTKKQSDEGFKYLLTYLVSEGESVSSIADIFGADLQSVYEANELSSTSIIYYFTPLLIPLKNEPPKKIIKQASPPETVEPPDSGGSSSSKKWVIVGVAVGVVVLILVGLALFFLCFRRRKQPELPPSTVKKFSDSDTKKISDFNSTTTNTQSWSLSSEGIRYAVDSLTKYKYEELQNATNFFSEENKIKGSVYRASFKGDDAAVKILKGDVSSEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENKSLNDWLHIEKVKSNSMFLSWFHRVQIAHNVADALNYLHNYANPPHVHKNLKSGNVLLDRNFRGKVSNFGLARVMENEGEEEGFQLTRHVIGTQGYMAPEYIENGLITPKMDVFAFGVVILELLSGREVVNDDKLLSSSFEQVFEGENVREKLRGFMDPNLRDEYPLELAYSMAEIAKRCVAKDLNLRPNVSEVFMVLSKIQSSTLDWDPSDEFERSRSGSHVSDSKYFSANV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2152 719 CDD LysM 253 289 IPR018392 -
Tpr4g2152 719 ProSiteProfiles Protein kinase domain profile. 339 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2152 719 Gene3D Transferase(Phosphotransferase) domain 1 484 703 - -
Tpr4g2152 719 SMART LysM_2 185 233 IPR018392 -
Tpr4g2152 719 SMART LysM_2 253 297 IPR018392 -
Tpr4g2152 719 ProSiteProfiles LysM domain profile. 252 296 IPR018392 -
Tpr4g2152 719 SUPERFAMILY LysM domain 252 297 IPR036779 -
Tpr4g2152 719 Gene3D LysM domain 252 307 IPR036779 -
Tpr4g2152 719 Pfam Protein kinase domain 447 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2152 719 PANTHER PROTEIN LYK5 78 705 - -
Tpr4g2152 719 SUPERFAMILY Protein kinase-like (PK-like) 389 681 IPR011009 -
Tpr4g2152 719 Pfam LysM domain 254 297 IPR018392 -
Tpr4g2152 719 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 78 705 - -
Tpr4g2152 719 Gene3D Phosphorylase Kinase; domain 1 379 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2152 Tpr-Chr4 22356814 22359372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2152 66 705 Receptor kinase-like Gene Family AT2G33580 51.791 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tpr4g2152 Pkinase 6.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2152 - - gmx:100818534 856.284