Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2117 ATGTCTTCTAGCTCAAAAAGTCAATTTAACCGTGAAAATTATGAAGAAATTGACCCGGATTACGCTGAATTCCTTGAGAAAAATGGTGAAGATTATTATGATAGATTGGAAGATTCCAGACTTGGAGTTCAAATTCAAAATGCACCTAACACCTACGCAGTAAGTTTTATTCCATTGGGATTTGCAGATCATGAAATTCCCGATGTACATATCTTTGAATTCACTCTTAACCATTTCAACCATTTCAGCAAAACACAAATTACTTTGCCAAATGAATTGTCAAAATATGTTCGTGATTTGAATTTGCAAACCCTAATTCTTGAAGTACCAGGAACAAACACTTCAAAGGTCCATTTAAGGTATCCAACCAATCCTTCTGAAAATGTCCACATTGTTGGAGGATGGAAAAACTTTTGCTTTGACAATGGAATTCAATTCGGTGATAGGCTTCGAATTGAGTTCAAACATGTTTATCCAAATGTTGGTAAAGTTTATAAGGTTACAACTTAA 510 0.3412 MSSSSKSQFNRENYEEIDPDYAEFLEKNGEDYYDRLEDSRLGVQIQNAPNTYAVSFIPLGFADHEIPDVHIFEFTLNHFNHFSKTQITLPNELSKYVRDLNLQTLILEVPGTNTSKVHLRYPTNPSENVHIVGGWKNFCFDNGIQFGDRLRIEFKHVYPNVGKVYKVTT* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2117 169 SUPERFAMILY DNA-binding pseudobarrel domain 67 155 IPR015300 -
Tpr4g2117 169 Pfam B3 DNA binding domain 79 154 IPR003340 GO:0003677
Tpr4g2117 169 Gene3D - 65 168 IPR015300 -
Tpr4g2117 169 ProSiteProfiles B3 DNA-binding domain profile. 72 169 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2117 Tpr-Chr4 21956825 21958342 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2117 B3 2.1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2117 - K11257 soe:110803845 39.2762