Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2115 ATGGCTAGGAAATTTGAGAGTGTCAAGGACATAAGTGATGCGAAGGATCTTTGGAAGATCTCTGTGAAAGTGAAAGAAAAATGGACTAACGTGAAGGATGGAAAAGAGTCTACTGAACTGTTGGTTGTGGACGAAAAGGGAGATGACATATCTGTGTTCATTCCTAATGAGCTACATCAGAAATTTGAAAAAGACATTCCTATATCTGTGAACAACACTTATACCATGCAAAATTTTCAAGTTACCAAAAATGATGATCAGTTTAAAACATCTTCCCATGATTACAAGCTGAGGTTCAATGGTGGAACTTTAGTCAAAGATGTGAATGTTCATCAAATTCCTGATGCAGTCACAAAGTTGAAACCTTTTAGTGAAATCGTCAATCAAAATTTCCGTGAAGATTTATTATATGATATTGTTGGATTGGTGGATCAAATTGGTTATTCACAGTCTATGTCTGGAACTAGAAAAGTTCAAGTTAACCTTACTCTTCGAGACCTTAGCAACATTCCAATTGCTTGCACTCTATGGGAAAACTATGCAGCTAAGTTCTTCAATGTTCAGAATCAAGCTAAGGGAGATCCAATTATTGTTTTGATGAAATATGCTAAAATCAGAAAAGAAGGAAAATGGCCGTTAACAATATCAAACACATGGAGTACCACTAAGCTTTTCATTAATGAAGAAGTTCCAGAGATTGTGGAGTTCAAGAAAAGCTTAATTGCCGGTATTGAAAGCGGTACTGTGGATCGATTTGCTGAAACTCCATCACAAATGATGAGCCAATCGTATGGAAGTTCGCAGTACACACCGCAACAAATATTCATGCACAATTCTGAGATCATGCCTCTGAGGAAAATTGTTCAACTACCGCAGGAAACAAAATGTGTGACAATTGTCAACACAATTAAGGTCAAGCCTACAAAATATGGTTGGTACTATTTGACATGCTTCAAATGTCCTAAACAATGCTTTGGTGAAGCTCCTCCATACAAATGTGGCGATCAACATGAAACTCAAACGGAAATTCTGAGGTACAAGTTGGATGTTGAGGTTGGTGATGGTCAGGCTAAGGCAACTTTTGTTTTCTGGGACCGCGAATGTGAACAATTAATTGGCAAAAGTGCCCTTGTCCTACGATCTGAGATGTTGGCGGATGGAATCCACGATCCTCTTGATTATCCAGAAGACATTGATCTAATTGCTGGGAAAACTTTAGCTGTTAAAGTTAAGTGGCAACCGAAGTGGAAGACCGGTTCAGTCATACAAATCAATCAAGCAGATGACTTTATCAATGAAATCACCTCTCAGTTCCCACCTACTGATGTTCCTCAAGGACTGGTCAAGGCTGTTGCTAAGAAATTAGCTATAGAGGACATTAGCACTGCAGAATCTGTACCACCAAATATATTTGAAGTCGAGGCTGAAGTTGAGCCTACTCCTACTGCTGAAGAAAATCCTGATGTTGATGACGTTATACCGACGATTTCTCTTTCTGCTTCTGATGAGATTGATCCACTCATTTTTGAAATGAAGACACCATCAAAACGGTCAAGTAATGACCTAACATCAACATCTCAAGATGCTGAAGTTGAAGATTTAATTGGAGAAAAGGCATCATCTACAAAATTGTTGAAAGTTGGAGGAAAGGCAGCAGGAAAGAAAGGTCTGAAAATTCCAAAAAAGGAAAAGTGA 1695 0.3841 MARKFESVKDISDAKDLWKISVKVKEKWTNVKDGKESTELLVVDEKGDDISVFIPNELHQKFEKDIPISVNNTYTMQNFQVTKNDDQFKTSSHDYKLRFNGGTLVKDVNVHQIPDAVTKLKPFSEIVNQNFREDLLYDIVGLVDQIGYSQSMSGTRKVQVNLTLRDLSNIPIACTLWENYAAKFFNVQNQAKGDPIIVLMKYAKIRKEGKWPLTISNTWSTTKLFINEEVPEIVEFKKSLIAGIESGTVDRFAETPSQMMSQSYGSSQYTPQQIFMHNSEIMPLRKIVQLPQETKCVTIVNTIKVKPTKYGWYYLTCFKCPKQCFGEAPPYKCGDQHETQTEILRYKLDVEVGDGQAKATFVFWDRECEQLIGKSALVLRSEMLADGIHDPLDYPEDIDLIAGKTLAVKVKWQPKWKTGSVIQINQADDFINEITSQFPPTDVPQGLVKAVAKKLAIEDISTAESVPPNIFEVEAEVEPTPTAEENPDVDDVIPTISLSASDEIDPLIFEMKTPSKRSSNDLTSTSQDAEVEDLIGEKASSTKLLKVGGKAAGKKGLKIPKKEK* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2115 564 CDD RPA1_DBD_A_like 19 105 - -
Tpr4g2115 564 Gene3D - 112 246 IPR012340 -
Tpr4g2115 564 Gene3D - 260 435 IPR012340 -
Tpr4g2115 564 SUPERFAMILY Nucleic acid-binding proteins 295 419 IPR012340 -
Tpr4g2115 564 CDD RPA1_DBD_B_like 138 241 - -
Tpr4g2115 564 Gene3D - 3 107 IPR012340 -
Tpr4g2115 564 SUPERFAMILY Nucleic acid-binding proteins 4 105 IPR012340 -
Tpr4g2115 564 PANTHER REPLICATION FACTOR A 1, RFA1 64 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g2115 564 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 64 381 - -
Tpr4g2115 564 Pfam Domain of unknown function DUF223 39 136 IPR003871 -
Tpr4g2115 564 SUPERFAMILY Nucleic acid-binding proteins 120 240 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2115 Tpr-Chr4 21923789 21936100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2115 1 376 Core DNA Replication Machinery Family AT5G08020 22.785 2.13e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2115 - - mtr:MTR_2g450060 402.519