Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2087 ATGCGTCCACCAATGAAGAAAATTGATTACAAAGTTGGAGATAAAGTTGAAGTATGTAGCAAAGAAGAAGGGTTTATGGGTTCATACTATGAAGCCACAATTGCTTCTTGTCTTGATAATGGAAGATATGTGATTCGTTACAAAAATCTTCTTAAAGATGACAAGTCTGAACTTCTCACTGAAACGCTTCTTCCAAAGGATCTTCGCCCATCACCGCCACGTGTTCGTAACCCTTCAAAGTTCCAACTCAATCAAACAGTTGATGTTTTTGATAATGATGGTTGGTGGGCAGGAAAAATCATCAGCGAGAAGATCCTCATGGAAAAGAATTATTACTAA 339 0.3776 MRPPMKKIDYKVGDKVEVCSKEEGFMGSYYEATIASCLDNGRYVIRYKNLLKDDKSELLTETLLPKDLRPSPPRVRNPSKFQLNQTVDVFDNDGWWAGKIISEKILMEKNYY* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2087 112 Gene3D - 1 77 - -
Tpr4g2087 112 PANTHER - 8 105 - -
Tpr4g2087 112 SMART agenet_At_2 8 76 IPR014002 -
Tpr4g2087 112 Pfam Agenet domain 13 73 IPR008395 -
Tpr4g2087 112 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2087 Tpr-Chr4 21643332 21644023 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2087 20 109 PHD Transcription Factor Family AT5G58610 35.455 1.58e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2087 - - mtr:MTR_4g079980 199.904