Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2072 ATGGAAGATCAACTAGTAAAAACAAGTGAAAATCAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAACCATTGATAATTGAAGAGATCTTTGTTGCTCCACCAATGCCACGTGAAGCTAGGATTCGTATTATATGCACCTCTCTATGTCATACCGATATCATTTTTTGGAACATGCAGGGTCCTCCTGCAATTTTTCCAAGGATTTTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGATGTAACAGAACTTACAAAAGGAGACACTGTTATCCCGATCTTTTTGGCGGATTGTGAAGAATGTATAGATTGCAAATCAACAAAGAGTAACCTTTGCTCGAAGTTTCCTTTCGACATTTCACCTTCGATGCTTAGATATGGTACCAGTAGATTCACCGATCTAAACGGAGGCATCATACACCATTTTGGATTTGTCTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCTTCAATTCCTCCCAATAGGGCTTGCCTCCTGAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAAAACAGCAAATGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGACTGGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGAATCACAGACTTTGTGCATGCTGGAGAATGTGAAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTGCATGTAGAAAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACCATCCAGGATCTAAGGTGAGCATCAATAGTAATGATGTTCTTTTTCAAGGGAAGACTCTCATGGGATCCATATTTGGAGGACTCAAACCCAAAACTGATGTACCAATTCTTTTTAAACGTTTCATGGACAAGGAACTAAATTTGGATGAGTTTGTCACACATGAGGTGAAGTTTAAAGACATCAACAAAGCTTTTGATTTATTGGTTAAAGGAGAGTGTCTTCGATGTGTCATTTGGATGGACAAATGA 1164 0.4081 MEDQLVKTSENQPIRCKAAVCRKPGEPLIIEEIFVAPPMPREARIRIICTSLCHTDIIFWNMQGPPAIFPRILGHEAIGVVESVGEDVTELTKGDTVIPIFLADCEECIDCKSTKSNLCSKFPFDISPSMLRYGTSRFTDLNGGIIHHFGFVSSFSEYTVVDIANLLKIDPSIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIGKKFGITDFVHAGECENKSVSQVIIEMTGGGADYCFECVGMASLVHEAYAACRKGWGKTIMLGVDHPGSKVSINSNDVLFQGKTLMGSIFGGLKPKTDVPILFKRFMDKELNLDEFVTHEVKFKDINKAFDLLVKGECLRCVIWMDK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2072 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Tpr4g2072 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Tpr4g2072 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Tpr4g2072 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Tpr4g2072 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Tpr4g2072 387 Gene3D - 19 380 - -
Tpr4g2072 387 SUPERFAMILY GroES-like 10 196 IPR011032 -
Tpr4g2072 387 Gene3D - 188 328 - -
Tpr4g2072 387 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 10 384 - -
Tpr4g2072 387 PANTHER ALCOHOL DEHYDROGENASE 10 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2072 Tpr-Chr4 21527548 21532146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2072 41 183 Monolignol Biosynthesis Gene Families AT4G37970 26.712 6.86e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2072 K00121 - gmx:100806887 666.381