Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2071 ATGGAAGATCAACTAGTAAAAACAAGTGAAAATCAACAAAAACAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAACCATTGATTATTGAAGAGATCTTTGTTGCTCCACCAATGCCACGTGAAGCTAGGATTCGTATTATATGCACCTCTCTATGTCATAGCGATATCATTTTTTGGAACATGCAGGGTCCTCCTGCAATTGTTCCAAGGATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGATGTAACAGAACTTACAAAAGGAGACACTGTTATTCCAATCTTCATGGCGGATTGTGAAGAGTGTATAGATTGCAAATCAACAAAGAGTAACCTTTGTTCAAAGTTTCCTTTCGAGATTTCACCTTCGATGATTAGATATGATACCAGTAGATTCACTGATCTAAACGGAGAGATCATACACCATTTCCTATTTGTCTCTAGCTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCTGCAGTTCCTCCCAATAGGGCCTGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAAAACAGCAAATGTGGAGCCAGGGTCTACAGTAGCTATCTTTGGACTGGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGAATCACAGACTTTGTGCATGCTGGAGAATGTGAAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTGCATGTAGAAAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACAAGCCAGGATCTAAGATTAGCATCAATAGTAATGATGTTCTTTTTCAAGGGAAGACTCTTATGGGATCCATATTTGGAGGACTCAAACCCAAAACTGATGTGCCAATTCTTTTTAAACGCTACATGGACAAGGAACTAAATTTGGATGAGTTTGTCACACATGAGGTGAAGTTTAAAGACATCAACAAAGCTTTTGATTTATTGGTTAAAGGAGAGTGTCTTAGATGTGTGATTTGGATGGACAAATGA 1173 0.4058 MEDQLVKTSENQQKQPIRCKAAVCRKPGEPLIIEEIFVAPPMPREARIRIICTSLCHSDIIFWNMQGPPAIVPRILGHEAIGVVESVGEDVTELTKGDTVIPIFMADCEECIDCKSTKSNLCSKFPFEISPSMIRYDTSRFTDLNGEIIHHFLFVSSFSEYTVVDIANLLKIDPAVPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIGKKFGITDFVHAGECENKSVSQVIIEMTGGGADYCFECVGMASLVHEAYAACRKGWGKTIMLGVDKPGSKISINSNDVLFQGKTLMGSIFGGLKPKTDVPILFKRYMDKELNLDEFVTHEVKFKDINKAFDLLVKGECLRCVIWMDK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2071 390 Gene3D - 22 383 - -
Tpr4g2071 390 Gene3D - 191 331 - -
Tpr4g2071 390 PANTHER ALCOHOL DEHYDROGENASE 12 387 - -
Tpr4g2071 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Tpr4g2071 390 SUPERFAMILY GroES-like 13 199 IPR011032 -
Tpr4g2071 390 Pfam Alcohol dehydrogenase GroES-like domain 44 171 IPR013154 -
Tpr4g2071 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Tpr4g2071 390 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 12 387 - -
Tpr4g2071 390 Pfam Zinc-binding dehydrogenase 215 335 IPR013149 -
Tpr4g2071 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 351 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2071 Tpr-Chr4 21522178 21525676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2071 44 189 Monolignol Biosynthesis Gene Families AT4G37970 27.333 2.73e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2071 K00121 - gmx:100806887 671.389