Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2061 ATGGGTTCCCAAGAGACTGAAGACTGTTTGCCCCCACCACCTCCTATCGTTCCTTCTGATGTGGAGCCAATCAAAATTGTTGAACCATATGAGCATGTCAAAAGGAAGCTTCCTACTAAGGTTCCAATGGCTAGGCGTGGCCTAGGTTCAAAGGGAAACAAACTTCCTTTGCTGACCAATCATTTTAAAGTTGATGTGAAAAACACTGATGGATACTTCTTCCAGTACAGTGTGGCTTTATTTTATGAAGATGGACGCCCTGTTGAAGGCAAAGGTTCTGGTAGGAAGATACTGGACAGAGTTCAAGAGACTTATAATTCTGAGCTGAATGGAAAGGACATTGCCTATGATGGAGAGAAAACTCTCTTCACTATTGGCTCTTTAGCACAGAACAAGCTTGAGTTTACAGTTGTTCTTGATGATGTTGTATCAAACAGGAACAATGGTAACTGCAGCCCTGATGGGCATGGAAGTCCAAATGATGCTGATAGGAAGAGGTTGAAAAAATCCTACAGATCAAAGAGTTACAAAGTTGAGATCAGTTTTGCCTCCAAAATTCCACTGCAGGCCATTGCCAATGCCTTGAAAGGGCATGAAACAGAGAATTATCAAGAAGCCATCAGGGTTCTTGATATTATCTTGAGACAACATGCTGCCAAACAAGGCTGTCTGCTTGTGCGACAAAATTTCTTCCACAATGATCCTAAGAATTTTACTGATGTTGGAGGTGGTGTACTTGGATGCAGAGGGCTGCATTCCAGCTTTAGAACCACACAAAGTGGGCTGTCTTTGAATATAGATGTGTCCACAACTATGATTGTCCGTCCTGGACCTGTTGTTGATTTCTTAATTGCAAATCAGAATGTTAGGGATCCCTTCAACCTTGACTGGAATAAGGCTAAAAGGACTCTGAAGAATTTGAGGGTTACAGCCAGCCCATCTAACCAGGAGTACAAGATTACTGGGCTGAGTGAATTGCCTTGCAAAGACCAGCTGTTTACACTGAAGAAGAGAGGTGGCGGTGAAGATGATTCTGAAGAGATCACAGTTTACGATTATTTTGTTAACCGCCGAAAGATTCCTTTGAACTACTCTGCTGACCTTCCCTGTATCAATGTTGGAAAGCCTAAGCGCCCTACATATGTCCCAATTGAGCTCTGCTCATTGGTATCCCTCCAACGGTATACCAAAGCCCTTTCCACTCTTCAAAGGTCATCCCTTGTGGAAAAGTCAAGGCAGAAGCCTAAAGAACGGATGACAGTCTTACAAGATGCATTGAGAACAAGCGACTATGGCTCTGAGGCTATGCTCCGTAACTGTGGCATTTCAATCACCTCTGGGTTCACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGAAGTTTGGCAACGGTGAAGATTTCAGTCCCAGAAATGGGAGATGGAATTTTAATAATAAGAAAATTGTGCAACCTGTTAAAATTGAGAAATGGGCTGTGGTGAACTTTTCTGCTCGTTGTGATGTGCGAGGACTTGTAAGAGATCTGATCAAATGTGGAGGAATGAAAGGAATCCACGTGGAACAACCATTTGATGTATTTGAAGAAAATGGTCAGTTTAGGCGGGCACCGCCTTTGGTAAGAGTTGAGAAGATGTTTGAATATGCTCAGTCCAAACTTCCAGGTGCTCCTAAGTTTCTCCTTTGTCTGCTTCCGGAGAGGAAGAACTCGGATCTTTATGGTCCGTGGAAGAAGAAGTGTCTTGCTGATTTTGGAATTGTTACTCAGTGCATAGCTCCAACTCGAGTAAATGACCAGTATCTGACAAATGTTTTGCTGAAGATAAATGCTAAGCTTGGTGGAATGAATTCTCTGTTGGGTGTTGAACATTCTCCATCTATTCCTATTGTATCAAAATCTCCCACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAAACTGAAATTCCTTCAATTGCTGCGGTTGTAAGCTCGAGGCAATGGCCTATGATATCTAAATATAGGGCATGCGTCCGAACTCAGGGTGCGAAGGTGGAAATGATAGACAATTTGTTCAAGCCAGTAGACGACGAGATCGATGAAGGAATTATAAGGGAGCTCTTGATTGATTTCTATACAAGTTCTGGGAACCGAAAACCCGACAACATTATCATTTTCAGGGATGGTGTCAGTGAGTCCCAGTTTAACCAAGTGTTGAACATTGAACTGAGCCAAGTCATTGAGGCATGTAAATTTCTGGATGAAACCTGGAATCCCAAGTTTTTGGTGATTGTTGCCCAGAAGAACCATCACACGAAATTCTTCCAGCCTGGATCCCCAGATAACGTGCCACCTGGAACTGTTGTTGACAACAAAATTTGTCATCCTAGAAATTATGATTTCTATCTGTGTGCACATGCAGGAATGATTGGCACAAGCAGGCCAACACATTATCATGTTCTTTTGGATGAGATTGGCTTTTCCCCAGATGATTTACAGGAGCTTGTGCACTCGCTTTCTTATGTTTATCAGCGGAGCACCACTGCTATCTCTGTTGTTGCTCCTATCTGCTATGCACACTTGGCTGCTTCCCAGGTTGGACAGTTCATGAAGTTTGAGGATAAGTCTGAAACTAACTCCAGCCATGGTGGTGGTATCAATGCCTCCCCTGTCCCTCAGTTGCCCAAGTTGAATGACATTGTCTGCAATTCTATGTTCTTTGTTTGA 2718 0.4323 MGSQETEDCLPPPPPIVPSDVEPIKIVEPYEHVKRKLPTKVPMARRGLGSKGNKLPLLTNHFKVDVKNTDGYFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDIAYDGEKTLFTIGSLAQNKLEFTVVLDDVVSNRNNGNCSPDGHGSPNDADRKRLKKSYRSKSYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFTDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNVRDPFNLDWNKAKRTLKNLRVTASPSNQEYKITGLSELPCKDQLFTLKKRGGGEDDSEEITVYDYFVNRRKIPLNYSADLPCINVGKPKRPTYVPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPKERMTVLQDALRTSDYGSEAMLRNCGISITSGFTQVDGRVLQAPRLKFGNGEDFSPRNGRWNFNNKKIVQPVKIEKWAVVNFSARCDVRGLVRDLIKCGGMKGIHVEQPFDVFEENGQFRRAPPLVRVEKMFEYAQSKLPGAPKFLLCLLPERKNSDLYGPWKKKCLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIVSKSPTLILGMDVSHGSPGQTEIPSIAAVVSSRQWPMISKYRACVRTQGAKVEMIDNLFKPVDDEIDEGIIRELLIDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQVIEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETNSSHGGGINASPVPQLPKLNDIVCNSMFFV* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2061 905 Gene3D paz domain 270 395 - -
Tpr4g2061 905 CDD PAZ_argonaute_like 276 390 - -
Tpr4g2061 905 CDD Piwi_ago-like 436 860 IPR045246 -
Tpr4g2061 905 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Tpr4g2061 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 904 - -
Tpr4g2061 905 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Tpr4g2061 905 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 904 - -
Tpr4g2061 905 SUPERFAMILY Ribonuclease H-like 545 866 IPR012337 -
Tpr4g2061 905 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Tpr4g2061 905 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Tpr4g2061 905 Pfam Mid domain of argonaute 470 510 IPR032473 -
Tpr4g2061 905 Gene3D - 455 621 - -
Tpr4g2061 905 Pfam N-terminal domain of argonaute 55 214 IPR032474 -
Tpr4g2061 905 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Tpr4g2061 905 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Tpr4g2061 905 Gene3D - 627 905 IPR036397 GO:0003676
Tpr4g2061 905 Pfam PAZ domain 280 407 IPR003100 GO:0005515
Tpr4g2061 905 SMART DUF1785_2 224 276 IPR014811 -
Tpr4g2061 905 SUPERFAMILY PAZ domain 271 431 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2061 Tpr-Chr4 21334780 21342774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2061 45 904 Eukaryotic Initiation Factors Gene Family AT5G43810 34.295 5.87e-156 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2061 K11593 - gmx:100779439 1545.02