Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2045 ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCCGAACCAACCAAACAAGTCGAACCGGAACCACAACAACAAGAAGTTGAAGAAGAGCAACAACAACCCGACGAAGAACCAGCCCAAAACATGGCCGTCGATGAACAAATCACTCCTATACAAGAAGGAGAAGAACAACAACAAGGCGAAGGCGAAGAGCAAGAACAAGAAGAAGTAGAAGAAGAAGAGGAGGAGGAAGAGGATGAACAACAAGAGGACGAAACCCAGCAAGATTCCGCCGCCGAAGTTCCGAATAACGCCGCCGATTCGGAGCAGGCCGAAACTACAACGGTGGAAGCTAACGGCGCCGGGGAAACAAACAATAACGACGAAGAAGAGGAAGATCTTGATTTGGAAGAAGAACCTGTTGAGAAGCTTCTAGAGCCTTTCACAAAAGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTAACGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATTTTTGTTCATGGCCTTGGATGGGATGCTACCGCCGAAACCCTAACTAGCGTGTTTTCGAAGTATGGTGAAATCGAAGATTGTAAGGCGGTAACTGATAAGGTTTCTGGAAAATCAAAGGGTTATGCCTTTATTTTGTTTAAGCATAGGACCGGTTGTCGCAGGGCGTTGAAGCAGCCGCAGAAGCAGATTGGTAACAGGACAACGTCTTGTCAGTTGGCTTCTGCTGGACCCGTGCCAGCTCCTCCACCGAACGGCCCACCTGTGTCGGAGTACACTCAAAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAGCTGCTTGAGTTTTTCAAGCAGTTTGGTGAGGTCGATGATGGTCCTTTGGGTCTTGATAAGGCGACTGGGAGGCCGAAGGGTTTTGCTCTTTTTGTTTACAAGTCTGTTGAGAGTGCTAAGAAAGCTTTGGAAGAGCCTAACAAGACTTTTGAAGGTCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCCTCAACAACATCACCAGTCACATCATTCCCACCATCACCATCAGCCTCACTACAATCCGAGGAAAGAAAAGAAGTATTCTCATGGTGGTGGCGGGCCATCACATGGTGGTCACTTGATGGCACCTGCCGGCCCTGCTGCTGGGGGTTACAACAATGCGGGAGTTCAGCCTCAGGGGCCATTGAATCCGGTACTTGGACAGGCGTTATCAGCGTTGCTAGCTAACCAAGGTGCTGGTTTGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCGGTGAATCAAGCTGGACCACCTCCTGCTTATGGTAATCAGGCTGCTATGGGATATGGTCAGCCGGGGTTGCAGCCACAATACCAGAACCCTCAGTTGGGGCAGACTGGTGGTGTTAGGCCTCATCCTGGTCCTGGTGGCGCTCCTTACATGAATCACTAG 1515 0.4944 MAKKRKLRSSDPEPTKQVEPEPQQQEVEEEQQQPDEEPAQNMAVDEQITPIQEGEEQQQGEGEEQEQEEVEEEEEEEEDEQQEDETQQDSAAEVPNNAADSEQAETTTVEANGAGETNNNDEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQAIEKHPDLTENVRQLADVDPAHRKIFVHGLGWDATAETLTSVFSKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGRPKGFALFVYKSVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYKGHYQQPQQHHQSHHSHHHHQPHYNPRKEKKYSHGGGGPSHGGHLMAPAGPAAGGYNNAGVQPQGPLNPVLGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPPAYGNQAAMGYGQPGLQPQYQNPQLGQTGGVRPHPGPGGAPYMNH* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2045 504 MobiDBLite consensus disorder prediction 117 131 - -
Tpr4g2045 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Tpr4g2045 504 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 491 - -
Tpr4g2045 504 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 491 - -
Tpr4g2045 504 MobiDBLite consensus disorder prediction 1 131 - -
Tpr4g2045 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 348 IPR000504 GO:0003723
Tpr4g2045 504 MobiDBLite consensus disorder prediction 88 116 - -
Tpr4g2045 504 MobiDBLite consensus disorder prediction 1 15 - -
Tpr4g2045 504 SMART rrm1_1 176 248 IPR000504 GO:0003723
Tpr4g2045 504 SMART rrm1_1 272 344 IPR000504 GO:0003723
Tpr4g2045 504 CDD RRM_RBM24_RBM38_like 271 346 - -
Tpr4g2045 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 244 IPR000504 GO:0003723
Tpr4g2045 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 341 IPR000504 GO:0003723
Tpr4g2045 504 MobiDBLite consensus disorder prediction 352 393 - -
Tpr4g2045 504 SUPERFAMILY RNA-binding domain, RBD 164 256 IPR035979 GO:0003676
Tpr4g2045 504 Coils Coil 55 90 - -
Tpr4g2045 504 MobiDBLite consensus disorder prediction 57 87 - -
Tpr4g2045 504 SUPERFAMILY RNA-binding domain, RBD 255 370 IPR035979 GO:0003676
Tpr4g2045 504 MobiDBLite consensus disorder prediction 361 380 - -
Tpr4g2045 504 Gene3D - 261 397 IPR012677 -
Tpr4g2045 504 Gene3D - 167 253 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2045 Tpr-Chr4 21108255 21111231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2045 267 350 C2H2 Transcription Factor Family AT2G19380 30.952 3.73e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2045 K12741 - gmx:100792637 503.442