Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2040 ATGTTGTTTGTATTGTCACTATTCACTCAACACAAATCAACTATAATGGGGTTGCCTCCTAGATTAATGATTTTCCATCTGATTCTATCCATTGGTTATTGTTTCAATCTTGGCAGAGCCATTGATTGTGGTGGAAATCAAGTTGCAAATACCATTATTGTTGATCAACAAGGAAGAGGAGCATTCAACATGATTCAACCTGCCATTGATTCAATAAAGAATAACAATGATCAGTGGGTTAAGATTCACATAAATCCTGGAAAATATGTAGGACGTGTTAATATTCCCATTGACAAGCCATGTATTATTTTAGAAGGATCTAATAGAGGAAATACAATAATTAGTTATGGTGATAGAAATGCAACAACAACATTCATTTCAATGCCATCTAATGTGATTTTGAGTGGCATTACATTTGAGAACACATTTGGAAATAACAGTCCAGCAATAGCTGCTGCTATAAATGGTGATAAAACATCAATATTTAAGTGTGGTTTCTTAGGTTATCAAGATACTTTATTCGATGGTTATGGGCGTCATTATTATAAGAATTGTTATATTCAAGGTGAAATTGACTTCATTTTTGGTTTTGCCCAATCTTATTTTCAGAGTTGTGTGATAAACGCAACACAAGATAGTTCGTTACCTCCCGGTTTTATCACAGCCCAATCTAGGAACTTACCAACTGAACGAGGTGGTTTTGTTTTTAGAAAAGGTTTTGTTACTGGAATTGGTAAAGTGAATTTAGGAAGAGCATGGGGTCCTTACTCAAGAGTTATATTTTGGGGAACGGACCTTTCTTCTGTGGTACTTCCTGAAGGATGGGATGCTTGGAGCTACAAAGGCAATGAAAAAAACTTCACCTATGCGGAAGTTGATTGTACAGGACCAGGGTCCAATATTCAAGGGCGTGTCCCATGGGAGAAGAAGCCAAATGAAATAAATATACATGATTATTCTTTACCAATTTTCATAAATCAAGATGGATGGCTTAACAACTTACCATCTACATTTTCCTATAAAAAAAAGAAAAACTTACCATCTACATTTGTGTAA 1056 0.3504 MLFVLSLFTQHKSTIMGLPPRLMIFHLILSIGYCFNLGRAIDCGGNQVANTIIVDQQGRGAFNMIQPAIDSIKNNNDQWVKIHINPGKYVGRVNIPIDKPCIILEGSNRGNTIISYGDRNATTTFISMPSNVILSGITFENTFGNNSPAIAAAINGDKTSIFKCGFLGYQDTLFDGYGRHYYKNCYIQGEIDFIFGFAQSYFQSCVINATQDSSLPPGFITAQSRNLPTERGGFVFRKGFVTGIGKVNLGRAWGPYSRVIFWGTDLSSVVLPEGWDAWSYKGNEKNFTYAEVDCTGPGSNIQGRVPWEKKPNEINIHDYSLPIFINQDGWLNNLPSTFSYKKKKNLPSTFV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2040 351 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 337 - -
Tpr4g2040 351 SUPERFAMILY Pectin lyase-like 48 339 IPR011050 -
Tpr4g2040 351 PANTHER PECTINESTERASE 16 337 - -
Tpr4g2040 351 Gene3D - 45 340 IPR012334 -
Tpr4g2040 351 Pfam Pectinesterase 52 325 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2040 Tpr-Chr4 21051906 21053972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2040 27 284 Carbohydrate Esterase AT2G19150 47.059 1.66e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2040 - - mtr:MTR_5g088290 541.576