Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2039 ATGTCACTATTCACTCAACACAAATCAACTATAATGGGGTTGCCTGCTATATCAATGATTTTCCATCTGATCTTATCCATTGGTTATTGTTTCAATCTTGGCAGAGCCATTGATTGTGGTGGAAATCATGTTGCAAATACCATTGTTGTTGATCAACAAGGAAGAGGATCATTCAACATGATTCAACCTGCCATTGATTCAATAAAGAATAACAATGATCAGTGGGTTAAGATTCACATAAATCCTGGAAAATATGTGGGACGTGTTAATATTCCCTATGACAAACCATGCATCATTTTAGAAGGATCTAGTATGAGTAATACAATAATTAGTTATGGTGATAAACAAGCAACAACAACATTTGTTTCAGCGCCACCGAATGTGATTTTGAGTGGTATTACATTTGAGAACACATTTGGACATAGTGGACCGGCAGTAGCTGCTAAAATAAATGGTGATAAAACAGCTATATTTAAGTGCGGTTTTTTGGGTTATCAAAATACTTTATTTGATGCAAGTGGGCGTCATTATTATAAGAATTGTTATATTCAAGGTGAAATTGACTTCATTTTTGGTTTTGCCCAATCTTTTTATGAGAACTGCGTGATGAACGCAACACAAGATAGTTCTTTATATCCGGGTTATATCACAGCCCAATCTAGGAAATTACCAACTGATCAAGGTGGTTTTGTTTTTAGAAGAGGGTTTGTTACTGGGTTTGGTAAAGTGAATTTAGGAAGAGCATGGGGTCCTTACCCAAGAGTTATATTTTGGGGAACTGACCTTTCTTCTGTGGTACTTTCAGAAGGATGGGATGCTTGGATGTACATAGGCCAAGAAAAAAACTTCATCTATGCGGAAGTTGATTGTACAGGACCGGGGTCCAATACTCAAGGCCGTGTTCCATGGGAGAAGAAGCCAAATGAAATAAATATATATGATTATACTATACCAAAATTCATAAATCAAGATGGATGGCTTAACAACTTACCAATACCATATTCATTTGTGTAA 1014 0.3609 MSLFTQHKSTIMGLPAISMIFHLILSIGYCFNLGRAIDCGGNHVANTIVVDQQGRGSFNMIQPAIDSIKNNNDQWVKIHINPGKYVGRVNIPYDKPCIILEGSSMSNTIISYGDKQATTTFVSAPPNVILSGITFENTFGHSGPAVAAKINGDKTAIFKCGFLGYQNTLFDASGRHYYKNCYIQGEIDFIFGFAQSFYENCVMNATQDSSLYPGYITAQSRKLPTDQGGFVFRRGFVTGFGKVNLGRAWGPYPRVIFWGTDLSSVVLSEGWDAWMYIGQEKNFIYAEVDCTGPGSNTQGRVPWEKKPNEINIYDYTIPKFINQDGWLNNLPIPYSFV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2039 337 Gene3D - 41 336 IPR012334 -
Tpr4g2039 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 332 - -
Tpr4g2039 337 Pfam Pectinesterase 48 323 IPR000070 GO:0030599|GO:0042545
Tpr4g2039 337 PANTHER PECTINESTERASE 14 332 - -
Tpr4g2039 337 SUPERFAMILY Pectin lyase-like 44 335 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2039 Tpr-Chr4 21048193 21050399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2039 23 280 Carbohydrate Esterase AT2G19150 45.421 1.00e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2039 - - mtr:MTR_5g088290 520.39