Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2020 ATGTTTCACTTTCACCGTCATCGTCTCAGAGCTCTTCTCCATCTCAACAATCTTCCCCAAACCTCAAAATGCCACCTTCTTCTTCTTCAAACCAACTTTCTCAACTCATTCTCCACCACCACAACTTCAAGTTCAGATCAACAATCTTTCACCATCTCATACCTCACCAAAACATGTGGCTTATCTCCACAAGATGCTCTCAAAGTATCCAAACGACTTCGTTTCAAAACCCCCCAAAAACCCGATTCCGTCGTCACCTTCTTCAAAAACCACGGTTTCTTAATTCACAACATACAATCCATCATTCTCAAGGATCCTGAGCTTCTTGTCGCAAACCCCATCAAATCAATTCTACCAAAGTTTCAATTTTTAGCTTCCAAAGGTGCTTCTCCTTCTGACATTGTTAAAACTGTAACAAGATGCCCTCGTTTTCTTCGTGTAAGTCTCGACAAACATATTGTCCCTGCTTTTGATTTGGTACGAAGTTTCTGTCCTTCTAATCAAAAAGCTATTGATTCTATAATTGCTTGTCCTACTTCAATTAGTGATTTTAGAATGAAACCAAATGTGAAATTTTTGATTGATTTTGGTCTCACTGGTTCAAATATTTATCATTTGCTTAGGACTAGACCTTCTATAATATGTTCTACTGATTTGAAAAATGCTGTTGAGGAGATTAAGGAATTAGGGTTTGACCCTTCAAAAGCTTATTTTAGTGTGGCATTATTGGCCAAAAGGGCTATCACCAAATCACAATGGGATGCTAAAGTTGATGTCTTGAAGAGTTGGGGTTTTTCTGAAGATGAAATTTTTAATGCATTTAAGAGGCACCCTAATTTTATGCTACGGTCTCCAGATAAACTCAACGCGGTTATGAGTTTTTGGGTCGATGGGCTTGGTTGGGATCCTTCGGTGTTATTGGCTAAACCAGTACTTTTTGGGTTTAGTATAGAGAAACGGCTTAGTCCAAGGGCTTCTATTGTCAAGTATCTTCTATCCAAAGGCCTTCGACGAAAGGATGCAAGTATATACACACCATTTGTTGTATCTGAGAAGTTGTTTGTGGAAAAGTTTGTGAATCGTTTTGCGGAGCATTCTTCTGATCTGTTAAAGCTTTACGAGGAAAAAATGAATCTTGCAGATAGCAGGAACGATCTTCAGATGGTTGATCAAATTTTGGTTTTATGTAACTGA 1194 0.3836 MFHFHRHRLRALLHLNNLPQTSKCHLLLLQTNFLNSFSTTTTSSSDQQSFTISYLTKTCGLSPQDALKVSKRLRFKTPQKPDSVVTFFKNHGFLIHNIQSIILKDPELLVANPIKSILPKFQFLASKGASPSDIVKTVTRCPRFLRVSLDKHIVPAFDLVRSFCPSNQKAIDSIIACPTSISDFRMKPNVKFLIDFGLTGSNIYHLLRTRPSIICSTDLKNAVEEIKELGFDPSKAYFSVALLAKRAITKSQWDAKVDVLKSWGFSEDEIFNAFKRHPNFMLRSPDKLNAVMSFWVDGLGWDPSVLLAKPVLFGFSIEKRLSPRASIVKYLLSKGLRRKDASIYTPFVVSEKLFVEKFVNRFAEHSSDLLKLYEEKMNLADSRNDLQMVDQILVLCN* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2020 397 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 Pfam mTERF 86 232 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 Pfam mTERF 252 354 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 PANTHER CGI-12 PROTEIN-RELATED 18 379 IPR003690 GO:0003690|GO:0006355
Tpr4g2020 397 Gene3D Transcription termination factor 3, mitochondrial 182 371 IPR038538 -
Tpr4g2020 397 Gene3D Transcription termination factor 3, mitochondrial 63 181 IPR038538 -
Tpr4g2020 397 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 18 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2020 Tpr-Chr4 20852660 20855848 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr4g2020 mTERF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2020 K15032 - gmx:102666739 343.199