Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2018 ATGTTTCAATATCACCGTCTCGGAGCTATTCTCAACCCTCAAATCCCAAAATGTTACCTTCTTCACCGAACCCATTCTCTCAAACCATTCTCCACCACCACCACCACTTCAGATTCAAATCAGCAATCTTTCACTGTTACATACCTCACCAACACTTGCGGTTTATCACCACAAAAAGCTCTTATAGCATCAAAACAATTTCGTTTCAACACCCCCAAAAAACCCGATTCAGTTATCACCTTTTTCAAAACCCAAGGTTTCTCCAATGATCAGATACAATCCATCATTCACAAAGCACCAATGCTCTTAACATTCGACCCCATCAAAACCATTTTGCCAAAGTTTCAATTTTTATCCACCAAAGGTGCTTCTTCATCTGACATTGTTGAAACCGTCACCAGAGCCCCCAATTTCCTCCGTGCAAGCCTTGACAAACAATTAATCCCGGCTTTTGAATTGGTAAGAAGATTCTGTCCCTCTGATAAAAAAGCTCTTACTTCAATAATTGCTTGTCCTACTTCTATTAGTGATATTCGTATGAAACCAAATATTAAAGTTTTACTTGATTTTGGGGCCACTCCTTCAAGCATTTACCGTTTGCTTACTACCAGACCTTCTATAATTTGTTCTTCTGATTTGAGGAATGTTTTGGAGGAAATTAAGGAATTAGGGTTTCATCCTTCATCATACAAGTTTTGTATGGCATTATTGGCCAAAAAGGCTATCACCAAATCACAATGGGATGCTAAAGTTGATGTCTTGAAGAGTTGGGGTTATTCTGAAGATGAAATTTTTAATGCTTTTAAAAAACAGCCTAACATTATGCTACGGTCTACGGACAAATTGAATGCGGTGATGCATTTTTGGATCAAACAGCTTGGTTGGGATCCTTTATTGCTCCTGTCAGCTCCTGATCTTTTTGGATTTAGTATAGAGAAAAGGTTTATTCCGAGGGCTTCTGTTGTCCAGTATCTTCTTTCAAAAGGTTTGATGAAGAAGGATGCCAGCTTAATATCACCATTTTATTTGACTGATGAGGTGTTCCGGCAAAGGTATATGGATCGTTTTGAGGAGGATGCCTATAGGCTAATAAAGCTATATAAGGGGGAGGATTCTAGCATCCGTTGTCTAGATAAGTTGTGA 1143 0.3876 MFQYHRLGAILNPQIPKCYLLHRTHSLKPFSTTTTTSDSNQQSFTVTYLTNTCGLSPQKALIASKQFRFNTPKKPDSVITFFKTQGFSNDQIQSIIHKAPMLLTFDPIKTILPKFQFLSTKGASSSDIVETVTRAPNFLRASLDKQLIPAFELVRRFCPSDKKALTSIIACPTSISDIRMKPNIKVLLDFGATPSSIYRLLTTRPSIICSSDLRNVLEEIKELGFHPSSYKFCMALLAKKAITKSQWDAKVDVLKSWGYSEDEIFNAFKKQPNIMLRSTDKLNAVMHFWIKQLGWDPLLLLSAPDLFGFSIEKRFIPRASVVQYLLSKGLMKKDASLISPFYLTDEVFRQRYMDRFEEDAYRLIKLYKGEDSSIRCLDKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2018 380 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 SMART mt_12 165 193 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 Gene3D Transcription termination factor 3, mitochondrial 175 361 IPR038538 -
Tpr4g2018 380 Gene3D Transcription termination factor 3, mitochondrial 49 174 IPR038538 -
Tpr4g2018 380 PANTHER CGI-12 PROTEIN-RELATED 15 370 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 15 370 - -
Tpr4g2018 380 Pfam mTERF 246 348 IPR003690 GO:0003690|GO:0006355
Tpr4g2018 380 Pfam mTERF 80 283 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2018 Tpr-Chr4 20841582 20842724 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr4g2018 mTERF 5.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2018 K15032 - gmx:102666739 351.673