Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2004 ATGAAAAATCCATTGGAATTTCCTTCCGTCAGCGGTTCCATAAGAATGCAACTTCGATCCTCATACAAGTGGGAATTGGTCGTTACTTCCTCAATCTCTAGGGGTAGAAATGTCCTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGATAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTTACTTCAGGTCAAAATAAAGAAAACAAATTTGTTTACTCTTGTTGGAAGCAATTTGTGACTGAGAACAAGTTGAAGTTCAGAGATAAGGTTATCTTCAATGCCACCACCGGTGATAATGTTATCGAAGTCCAGATCCTGCGTCGTCGCCGTCGTTCACGTTAG 381 0.3885 MKNPLEFPSVSGSIRMQLRSSYKWELVVTSSISRGRNVLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKENKFVYSCWKQFVTENKLKFRDKVIFNATTGDNVIEVQILRRRRRSR* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2004 126 Gene3D - 14 123 IPR015300 -
Tpr4g2004 126 SMART B3_2 23 122 IPR003340 GO:0003677
Tpr4g2004 126 Pfam B3 DNA binding domain 28 121 IPR003340 GO:0003677
Tpr4g2004 126 ProSiteProfiles B3 DNA-binding domain profile. 24 122 IPR003340 GO:0003677
Tpr4g2004 126 SUPERFAMILY DNA-binding pseudobarrel domain 24 121 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2004 Tpr-Chr4 20702709 20703363 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2004 B3 3.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2004 - K09792 mtr:MTR_6g087720 52.7582