Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2003 ATGTCTTCCAACGAAGTTCAAATACCAAAACTTTATGATGATATCATGTTTATCAAGGGTGGAAATGCTGCTGGTGAGTATCAGTTGAGGGTTTTAAGAAAGTGGTATGTTTTTAATAGTGTTTTTCCTGGAAATGTTGAATCGGTTGATATGGTGATGATCGACAGGAATGGTCATAAAATCCAAGCCACTATTCCTAATCTTTTGTTGTGTCTTTTCGATAACCTAATAGATGAGGGTAACGTTTATGTTTTGTCTAATTTATCTGTGACTTACAACTTGCATGAGATTCTAGGAAGTTATAATAGGTATATGCTTGTGTTTAATGTTAACACTAAGGTGAATCTTTCTTCGAGTTCTTCTATTGCACATTATGGGATGTCCCTCATCGGATCCGATAATGTTCTCCAGCTTTCCGAAAGATTCAAGTATTTAGTTGATGTAATTGGTGTGATAACTTTCATCAGACACAACAAAAACTATTTCGATGACGGCACCATATCCACGACAGTTTCTTTCAAGCTTACGGATCATAGAAATTCGTATGATTGTGAGCTGTGTGGTGACTATGTTGATCTTTTTCGTGTATTGATGGAGAACCAACCCCTAGGGTTGCCCATTGTTGTCCTCCAGTTTGCTAAAATAACTATGCAACAAGGTTCCATTGTTGTTCAAAGTGTTGACCATGTCACAAGGCTCTATGTTAATCCAGTCATTCCTGAATCAATACAATTCAAGAGAGGATATCTTTTTAAATTGATTCTGGCACTGAACCAGACCAGAAGACTTCTTGGTAATTGTCCGACGGATAAATCGGTGGGCTTTAGGTTTGATGTCAGTTACCAATTCAAGACAATTTCTGAGCTAATGGATGACCCCCAAACTGGTATTTTTATTGTCAATGCTCGCATAGTTGATATGATTGAACTGAACCCGTGGTGGTATCCGGTGTGTCGTTGTGATATCATTGTTGAGAGCTACCTCGGTGCCTATTTTTGCGAGAACTGCCACGCAACAGAATTTTCTGCTGTTCCAAAGTATAGATTTAAAATGGTGTTAGAAGATGAAACTGGTGCCTGTTTTATTGAGGCCTATGATCATGTTATGCTTCCTATTTCATTGGTTGACCCTAATAATCCGATATTGCCTGAGGCTTTTTTTCCCCGTGCATTTGACTCGGTAATGGGCAAAAGTATAGTTTTGATCCTGCACAAGACAGTTCACATTGATAAATTTCTTGATCCAGTATATGAGGTTCGTTGTGTGTCCGATGATCCTCAGGTGATGAATTTTTATGCTAGCATTGGTCTTTGCAGGATTCCTTCGAAGGTTGTTCCAAATTTGATTGATCCAGAATGCAATCTGATGAAAAAAAAGGTGTATCGTCCTCCTGTTACCTCTACCGAACGTTTGCTTGACGAGTATCTAGGACCGGTTTATCGCAGGAATCCGCCATGCGACGATGCAGAGAGTTCTTCTGCTGCTGCTGGGAAATCTAGATTGGTTAGGCAATGTAGTAGTAGTTTATTTGTTCTGGATAGTTTGAATGAATATGAAGGTTTTCACATTACAATGGAGTATTCCATTGATAATATATCCAGGTTTAGTGTTTGTTCTTTAATGTTTAGGAATGATGTTGTAATTGTGTATTGA 1653 0.3842 MSSNEVQIPKLYDDIMFIKGGNAAGEYQLRVLRKWYVFNSVFPGNVESVDMVMIDRNGHKIQATIPNLLLCLFDNLIDEGNVYVLSNLSVTYNLHEILGSYNRYMLVFNVNTKVNLSSSSSIAHYGMSLIGSDNVLQLSERFKYLVDVIGVITFIRHNKNYFDDGTISTTVSFKLTDHRNSYDCELCGDYVDLFRVLMENQPLGLPIVVLQFAKITMQQGSIVVQSVDHVTRLYVNPVIPESIQFKRGYLFKLILALNQTRRLLGNCPTDKSVGFRFDVSYQFKTISELMDDPQTGIFIVNARIVDMIELNPWWYPVCRCDIIVESYLGAYFCENCHATEFSAVPKYRFKMVLEDETGACFIEAYDHVMLPISLVDPNNPILPEAFFPRAFDSVMGKSIVLILHKTVHIDKFLDPVYEVRCVSDDPQVMNFYASIGLCRIPSKVVPNLIDPECNLMKKKVYRPPVTSTERLLDEYLGPVYRRNPPCDDAESSSAAAGKSRLVRQCSSSLFVLDSLNEYEGFHITMEYSIDNISRFSVCSLMFRNDVVIVY* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2003 550 Gene3D - 274 409 IPR012340 -
Tpr4g2003 550 CDD RPA1_DBD_B_like 147 249 - -
Tpr4g2003 550 Pfam Domain of unknown function DUF223 51 120 IPR003871 -
Tpr4g2003 550 SUPERFAMILY Nucleic acid-binding proteins 143 249 IPR012340 -
Tpr4g2003 550 CDD RPA1_DBD_A_like 28 114 - -
Tpr4g2003 550 SUPERFAMILY Nucleic acid-binding proteins 30 120 IPR012340 -
Tpr4g2003 550 Gene3D - 14 116 IPR012340 -
Tpr4g2003 550 Gene3D - 121 252 IPR012340 -
Tpr4g2003 550 SUPERFAMILY Nucleic acid-binding proteins 281 403 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2003 Tpr-Chr4 20699722 20702303 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2003 53 366 Core DNA Replication Machinery Family AT5G08020 21.637 1.77e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2003 - - mtr:MTR_8g062060 234.187