Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2001 ATGGCCAAAGTTTGTAAGAAGTTTGACAGTGTTTCTGAGATTTTACCAAACAAGGATTGTGTTCGAATCAAGGTGCGTGTTCTTCGTATCTGGAAGACGTCTTCGTTCCTTAATCCTTCTGAAGTCAATTCAATTGAGATGGTTTTGGTTGATGAAAAGGGTGGAAAGATTCATGCCTCTATTAGGAAGCAGTTTTTATATATGTTTGAGTCTAAAATTGAAGAAGGACAAGTGTATCAGATGTCCTATTTTTCTGTTGTTCCTCAGACTGGTTTCTACAGAACTACTCTACATCCATACAAGCTATTATTCCAAATTAAGACAAAGGTTGTTGCTGTTAAGAGCTCTGATATATCTCATCATGGTCTCACATTGACAAGTTTTGCTGAAGTTTGTAGTCATGTCCATGATTATGAATTTTTAGTTGATGTTATGGGTTTGTTATCTGGAATTTCTGCTGAGAGGGAATATGTTAGGGATGGAAATGTTACAAAGATGGTTGTGTTGGAGTTGACTGATACTAGTGGGAAATGTGAATGTGCTTTGTTTGGGGATTATGTTGATGAGTTAAACAAGAAACTGGGCAAGACATCTGGTGGTCTCCCTGTGGTCGTAATTCAGTTTGCAAAGGTTAAGATATTTAGAGACCAAGCATCCATTCAAAATGTCATCAACACTACAAAGATTTTTGTGAATCCTGATATCCCTGAAGCTGATGCATTTAAGGATAGCATTGGTGTGCATGGTATTATGTTGGATGCCACTGTTTCTGTGATTGGGCCTCGTGCCAAACCTGCTATGGATGAAGAATTTCTGAGGATGTATCCAAAAAAAACTGTATCTGAACTAAGTGAAATGGAAGAGGAAGGGGTTTTTGCTGTTTTTGGGGTGGTTAGTTCTATTGTTCGTGGGGAGGATTGGTGGTATCCTGCATGCAAGTGTCATAAGTCTGTTATTGCTGATTCTGGGGCTTACTTTTGCAATGGATGCAACAAGCATGTTTTTCAAGTTGTTCCAAGGTTTAGGGTGAAGATTGCTGTGTCTGATGGTGCTTCTACTTGTGTGTTTGTTCTATTTGATACTGATATGAGTTACATTTTAGAGAAATCTTGTGCTCATTTTGTCGGAAGATCCAAGGCTGCTCCTGATGATGGTTCATACCCTGCTGAGTTTGAGCTTCTCGTCGGTAAGAAGATGTTGTTCATAATTGATAAGGGAATGAAGGTTACTAGGATTGATGATGGAACTTTTAGAGTGAAGCGTGTGTGTATGGATGCTAAGATTATTGGGAGTTTTGCTGCTGAGGGACCATATGTCACTCCTGTTAGGAATGTTTCTCCAGTCATTAATCTTGATTCTGATGCTGCATCTCCTGATGTTGATTTTGTTGAAGAAACCCAGCCACTTGCACTCTTGAAAAACACTGCTGTGACACCTCCTGGTCTAGGTTATAGTCCAGTGAAAAATGACATTGTGGTGAACACTGTGAAAAGGAGCCTCTCCAGTTCTTTTGATAGTGTTCAACCAGATGAAAAGAAGAAGCGTCTAAGGAAGATCAAGATCGAGAATGAATGA 1575 0.3937 MAKVCKKFDSVSEILPNKDCVRIKVRVLRIWKTSSFLNPSEVNSIEMVLVDEKGGKIHASIRKQFLYMFESKIEEGQVYQMSYFSVVPQTGFYRTTLHPYKLLFQIKTKVVAVKSSDISHHGLTLTSFAEVCSHVHDYEFLVDVMGLLSGISAEREYVRDGNVTKMVVLELTDTSGKCECALFGDYVDELNKKLGKTSGGLPVVVIQFAKVKIFRDQASIQNVINTTKIFVNPDIPEADAFKDSIGVHGIMLDATVSVIGPRAKPAMDEEFLRMYPKKTVSELSEMEEEGVFAVFGVVSSIVRGEDWWYPACKCHKSVIADSGAYFCNGCNKHVFQVVPRFRVKIAVSDGASTCVFVLFDTDMSYILEKSCAHFVGRSKAAPDDGSYPAEFELLVGKKMLFIIDKGMKVTRIDDGTFRVKRVCMDAKIIGSFAAEGPYVTPVRNVSPVINLDSDAASPDVDFVEETQPLALLKNTAVTPPGLGYSPVKNDIVVNTVKRSLSSSFDSVQPDEKKKRLRKIKIENE* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2001 524 Pfam Domain of unknown function DUF223 46 134 IPR003871 -
Tpr4g2001 524 PANTHER REPLICATION FACTOR A 1, RFA1 20 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g2001 524 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 375 - -
Tpr4g2001 524 CDD RPA1_DBD_B_like 143 244 - -
Tpr4g2001 524 CDD RPA1_DBD_C 277 403 IPR013955 -
Tpr4g2001 524 Gene3D - 116 249 IPR012340 -
Tpr4g2001 524 SUPERFAMILY Nucleic acid-binding proteins 125 253 IPR012340 -
Tpr4g2001 524 Gene3D - 6 112 IPR012340 -
Tpr4g2001 524 CDD RPA1_DBD_A_like 22 110 - -
Tpr4g2001 524 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Tpr4g2001 524 Pfam Replication factor-A C terminal domain 293 375 IPR013955 -
Tpr4g2001 524 Gene3D - 269 428 IPR012340 -
Tpr4g2001 524 SUPERFAMILY Nucleic acid-binding proteins 275 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2001 Tpr-Chr4 20692208 20695282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2001 49 367 Core DNA Replication Machinery Family AT5G08020 24.251 1.53e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2001 - - mtr:MTR_8g062030 489.574