Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1974 ATGGATTCGGGTCTGAAGAGCGATACCGAATCCGAATACAACTATGCCATTAGCGGCAAAATAATGCTAACAGCCACTATCATTCTCTTCATCATTATCATCATAATACTCTCTTTTCATCTCTTAATTCGATGGTACCTTCTACGTTCCAGCAACCGTCAACAACACCGCCGTAACGGTAACCGTCACGTTCAACGTCAACCGTTCGTTTTCTACGTTGATCCTTCCGCTCCTGCTTCACTGATCCAAGCCGTCTCTCGAGGTTTAGATGCCTCTGTTATTTCCTCACTCCCAGTCTTCAAATTTTGTCCTAAGACTCACCCGAAGGGAGTGGAATGTGCGGTTTGTTTATCGGAGTTTGAAGAAGGGGAAACGGGTCGGGTTTTACCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCACTCTCATTCTACTTGTCCGCTTTGTAGAGCTCCCGTGGAGCCGGCTCCTCCGGTTCAATTGACCCGATCCGAAGTAGTTATTGATGTGTGTGACTGTGAACCGGAATTGGTTTTGGATTCAAGTTCCGAGGAAGAAATGAACCGGTCTGAACCGGAGTTTTCTTCTTCTTCTTCTTCTTCAAGTTCGAAGCAATCTTCGTTTGTTGGCGTTACAGTTGAGATTCCAGAAAGAAGTGAATGCGATTGCGAGAGGTTCGTAGCTGGTGAGTCGAGTTGTGATTCATCGTCGTCGTCGTCGTTTCGATCCCCGATGAGTCGTGTGTTGTCGTTTACCAGAATTCTTAGTAGAGAGAGGAAACCGAGTGTTTCTGTGATCGAGTTAGATGAAGAACGAGGTGGAAGGGAGGTGACTCAGTGA 855 0.4538 MDSGLKSDTESEYNYAISGKIMLTATIILFIIIIIILSFHLLIRWYLLRSSNRQQHRRNGNRHVQRQPFVFYVDPSAPASLIQAVSRGLDASVISSLPVFKFCPKTHPKGVECAVCLSEFEEGETGRVLPKCNHSFHIDCIDMWFHSHSTCPLCRAPVEPAPPVQLTRSEVVIDVCDCEPELVLDSSSEEEMNRSEPEFSSSSSSSSSKQSSFVGVTVEIPERSECDCERFVAGESSCDSSSSSSFRSPMSRVLSFTRILSRERKPSVSVIELDEERGGREVTQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1974 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 161 IPR013083 -
Tpr4g1974 284 SUPERFAMILY RING/U-box 93 163 - -
Tpr4g1974 284 SMART ring_2 113 154 IPR001841 -
Tpr4g1974 284 PANTHER RING-H2 FINGER PROTEIN ATL64 10 222 - -
Tpr4g1974 284 MobiDBLite consensus disorder prediction 197 214 - -
Tpr4g1974 284 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Tpr4g1974 284 Pfam Ring finger domain 112 155 IPR001841 -
Tpr4g1974 284 CDD RING-H2_EL5_like 112 155 - -
Tpr4g1974 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 222 - -
Tpr4g1974 284 MobiDBLite consensus disorder prediction 186 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1974 Tpr-Chr4 20507988 20509392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1974 14 281 Rapid Response to Elicitors AT3G16720 48.097 4.37e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1974 - - gmx:100791545 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1974 4 20507988 20509392 Tpr4g1974 4 20507988 20509392 ECH