Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1973 ATGGCTGGAGGTGCAATAGAAAATAAAAACCATGAGCAAAAGAAGAAGTTCGCTGCTCTCGGTGTATCTTCGATCTTACTTATCGCCATGGTTGCTGCGGTGGCAGTAGGTATATCGACCGAAGATGCTACCGAAGAATTAGGAGGAGGTCATGGTAGTGGTAACCAAATTTCAAAATCACAAAAAAATGTACAAATACTCTGTGATGCAGCAGAGTACAAAAAAACCTGCGAAAAGAGTCTTGAAAAAGCTTCAACAGAAACCTCAGACATGAAGGAATTGGTGAAAGCAGCATTCAATGCAACAGCTAATGAACTCTTGAAACAGATTGATAACTCAACACTTTACCATGAATTAGCTACCAATGACATGACAAAACAAGCTATGGAAATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCAATTAATACATTGGATAAATTTGAGCTAAGTAAGCTAGATGAATATGCTTATGATCTTAAGGTTTGGCTCGCAGGTACACTTACTCATCAACAAACATGTTTAGATGGATTTGAGAACACAACTACTCATGCAGGACAAACCATGGCTAAGGTTCTTAACACATCTTTGGAGCTAAGTAACAATGCTTTTGATATTATAAGTGGAGTTGCAGATATTATGAAAAGTCTTAACTTGAGTTCTTTAGCAAGTTCCATAAATCATAGGAAACTTTTGTCTGATGATGATGGTTTACCAACATGGGCTAGTCAAACTCAAAGGAAACTTCTTGTGGCACCTGAGAGTATTAAGCCTAATGTTGTTGTTGCTCAAGATGGTACTGGACAGTTTAAGACTTTGACTGAGGCACTTAAACTTGTTCCTACTAAGAACAAGGTTCCTTTTGTCATTCATGTTAAGGCTGGTGTCTATAATGAGTATGTTACTTTGGATAAACATAGGGACCATGTTACTATTATTGGTGATGGTCCTACAAAGACCAGATTTACTGGCAGCAAAAACTATGTTGATGGTGTTCAGACTTACCTCACTTCAACATTCAGTGTGAACTCTGCTCATTTCATGGCCATCAACGTCGGATTCGAGAACTCAGCAGGAGCTGAGAAGCACCAAGCAGTAGCCCTCCGTGTAACAGCAGACAAAGCAATCTTCTACAACTGTCACATGGACGGTTTCCAAGACACACTATACGTACAATCAAAAAGACAATTCTACCGCGACTGTACGGTGACAGGAACCATCGACTTTGTCTTTGGTGATGCTGTCGGAGTTTTCCAAAACTGCAAGTTCATCGTCAAAAAGCCATTGGAAGATCAACAATGCATGGTAACAGCAGGCGGAAGAACCAAACCCGAAAGTCCATCTGCCCTTGTTTTCCAAAACTGTCATTTCACCGGTGAACCAGATGTAGCTACCTTGGACCCCAAGATAGCATATTTGGGTAGACCATGGAGAAATTACTCCAAGGTTGTTATCATGGATTCTGATATTGACGGTATCTTTGTACCACAAGGTTATATGCCATGGATGGGAAGCGCTTTTGAAGACACATGTACTTATTACGAATACAACAATATCGGTGCTGGTGCTAACACTGCAGGAAGAGTGAAGTGGCCTGGTTTTAAAGTCCTTACTGCCCCTGAAGCTGGTGATTATTATCCAGGAAAGTTTTTTGAACTTGCTAATTCAACTCAGCGTGATGTTTGGATTGTTGAAGCTGGAATTCCTTATTCAATTGGACCAAAACCAGCTGGACTACTTACACCTGCACCACAATAA 1773 0.4033 MAGGAIENKNHEQKKKFAALGVSSILLIAMVAAVAVGISTEDATEELGGGHGSGNQISKSQKNVQILCDAAEYKKTCEKSLEKASTETSDMKELVKAAFNATANELLKQIDNSTLYHELATNDMTKQAMEICKEVLGYAVDDVHQSINTLDKFELSKLDEYAYDLKVWLAGTLTHQQTCLDGFENTTTHAGQTMAKVLNTSLELSNNAFDIISGVADIMKSLNLSSLASSINHRKLLSDDDGLPTWASQTQRKLLVAPESIKPNVVVAQDGTGQFKTLTEALKLVPTKNKVPFVIHVKAGVYNEYVTLDKHRDHVTIIGDGPTKTRFTGSKNYVDGVQTYLTSTFSVNSAHFMAINVGFENSAGAEKHQAVALRVTADKAIFYNCHMDGFQDTLYVQSKRQFYRDCTVTGTIDFVFGDAVGVFQNCKFIVKKPLEDQQCMVTAGGRTKPESPSALVFQNCHFTGEPDVATLDPKIAYLGRPWRNYSKVVIMDSDIDGIFVPQGYMPWMGSAFEDTCTYYEYNNIGAGANTAGRVKWPGFKVLTAPEAGDYYPGKFFELANSTQRDVWIVEAGIPYSIGPKPAGLLTPAPQ* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1973 590 PANTHER PECTINESTERASE 9 582 - -
Tpr4g1973 590 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Tpr4g1973 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 213 IPR035513 -
Tpr4g1973 590 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Tpr4g1973 590 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 213 IPR006501 GO:0004857
Tpr4g1973 590 PANTHER PECTINESTERASE 9 582 - -
Tpr4g1973 590 Gene3D - 261 579 IPR012334 -
Tpr4g1973 590 CDD PMEI-like_3 67 216 - -
Tpr4g1973 590 Pfam Plant invertase/pectin methylesterase inhibitor 64 209 IPR006501 GO:0004857
Tpr4g1973 590 SUPERFAMILY Pectin lyase-like 261 576 IPR011050 -
Tpr4g1973 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 215 IPR035513 -
Tpr4g1973 590 Pfam Pectinesterase 264 555 IPR000070 GO:0030599|GO:0042545
Tpr4g1973 590 SMART PMEI_2 59 211 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1973 Tpr-Chr4 20504814 20507249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1973 12 578 Carbohydrate Esterase AT3G05610 43.958 2.33e-179 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1973 K01051 - gmx:100800194 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1973 4 20504814 20507249 Tpr4g1973 4 20504814 20507249 ECH