Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1968 ATGATTAGTATATATGCAGTTATCATGGTTCATTTCCCATCTTTTGTAAACGGATTGGCAAGAACAATATCAATCAAGAAAGAGAAGAATTTTCAAAAGGATGATGCAAGAAAAGCTGTGGAAGAATTGGCAAAAGAAGCAAGAAAGAATGAATTGTTTTTGAGTTCCTCTGGAGTTGTTAGGTCCAACAAGGACAACAGTTTTGTTTCTGTTTTTACACATAGAGGCCAAAAAGGAGTCAACCAAGATCGCCTCGTTGTTTGGGAGGAATTTGGTTGCCAACAAGACATGATGTTTTGTGGAGTTTTTGATGGGCATGGTCCTTGGGGACATTTTGTAGCTAAAAGGGTAAGGAAATTAGTACCAGCCATTTTGCTATGCAATTGGCAAGAAAATCTTCTGGCTGCAAAATCAATTGACCTGAATTTTAAGATGGAAGAAGACAAAAATGTTCATGGATTGGACCTATGGAAACAGTCCTACATAAAGGCTTTTGCTGCCGTTGACCAAGATTTGAAGCAGCACACTGGAATTGATTCATTTAGAAGTGGCACTACAGCTTTGACATTTATCAAACAGGGTGAAAACCTTATTATAGCAAATGTGGGTGATTCAAGACTTGTGTTGGCTACAACTTCAGAAGATGGCACATTATTTCCACTTCAGCTTACTACTGACTTCAAACCAAATTTACCAAAGGAAGCAGAGCGTATAAAAGAATCAAAAGGACGTGTATTTTGTATGAAAGATGAACCAGGAGTGTACAGAATTTGGATGCCAAACTGTAAAACACCAGGATTAGCAATATCTAGAGCTTTTGGTGATTATTGTATGAAAGATTATGGTCTAATCTCTGTGCCAGATGTGACACAGAGAAAAATTACCACTAGGGATCAATTTATCATCTTAGCTTCAGATGGGGTGTGGGATGTGGTATCAAACCAAGAGGCAGTGAAGATAGTTTATACCGCATCACATAAAGAAAAAGCAAGTGAAAGGCTTGTGAAGTATGCTATGCGTGAATGGAAAAGAAAGAGAAGTGGTATTGCTATGGATGATATGTCAGTAATTTGCCTCTTCTTTAATCAACTTCCAGCCACTAAAGTTGTTGATTAA 1116 0.3772 MISIYAVIMVHFPSFVNGLARTISIKKEKNFQKDDARKAVEELAKEARKNELFLSSSGVVRSNKDNSFVSVFTHRGQKGVNQDRLVVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPAILLCNWQENLLAAKSIDLNFKMEEDKNVHGLDLWKQSYIKAFAAVDQDLKQHTGIDSFRSGTTALTFIKQGENLIIANVGDSRLVLATTSEDGTLFPLQLTTDFKPNLPKEAERIKESKGRVFCMKDEPGVYRIWMPNCKTPGLAISRAFGDYCMKDYGLISVPDVTQRKITTRDQFIILASDGVWDVVSNQEAVKIVYTASHKEKASERLVKYAMREWKRKRSGIAMDDMSVICLFFNQLPATKVVD* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1968 371 SMART PP2C_4 59 359 IPR001932 -
Tpr4g1968 371 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 9 368 - -
Tpr4g1968 371 Pfam Protein phosphatase 2C 93 340 IPR001932 -
Tpr4g1968 371 Gene3D - 54 364 IPR036457 -
Tpr4g1968 371 SUPERFAMILY PP2C-like 61 364 IPR036457 -
Tpr4g1968 371 CDD PP2Cc 68 361 IPR001932 -
Tpr4g1968 371 Coils Coil 26 46 - -
Tpr4g1968 371 PANTHER ALPHABET, ISOFORM E-RELATED 9 368 - -
Tpr4g1968 371 ProSiteProfiles PPM-type phosphatase domain profile. 68 361 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1968 Tpr-Chr4 20460980 20463713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1968 9 362 PP2C-type Phosphatase Gene Family AT3G05640 58.708 9.90e-160 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1968 - - gmx:100814087 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1968 4 20460980 20463713 Tpr4g1968 4 20460980 20463713 ECH