Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1966 ATGGGACAAGAATCAGATTCCAAATCCAAGTTGGTGATAGAAATTTGCTCCATTTCAACACGTTCTGCATCTTGTGTTCATAGGATTCTTTCAAATCCAACCAAAACAACTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGTGTAAGTCTCATTCGCAAGAGATACCATAAACTTGCATTGCAACTTCACCCAGATAAGAACAAACATCCAAAAGCTGAAATTGCCTTCAAACTTGTTTCTGAGGCAAATGCATGTCTAACTAATGTAGCAAAAAGAGAAGCTTTCGATTTCGAGAGGTACAAGCATTTCTGCATTGAGTGCAAGAGAATTCCTTATACAAAATCGGCCAATGTTTCTGTCAATTCTGGTGGTTCAGGTTTCAAGGCATGGAATATTATCACGAAATCGCAGACTTTTAAGTTTTGGAGAAATATTAGGGATGTGAGAGAGAGATTTAATGAGGAGGCTAAGGTGATTGAGAATTGTTTGAGAGTAAATTCAATGTCAAGGAAAGAATCACCACTCTACAATCCAGCTAGTTATCTACATAGGAGCAAGTCAATGCATAGATTTGAGAAAGAAACGCCCGTTTTCAATCCGTCGGATTATTTGTACCAAGGTTATCCTCATATGAGAGGTTTTGGTAACAAGAATGCTTCCACATTTATGTACTTGCAGACAGCTAGTATGCTGCAGAATGAAAAGCGAGGAGCGCAGCATAGCTCGCCTGTTTTTGAGGTCAAAACACGGAGTATGTTTACAAACCAGTTTGCTTTTGTACCATCAAGATATTAG 810 0.3864 MGQESDSKSKLVIEICSISTRSASCVHRILSNPTKTTFIDWYCILGVEENAGVSLIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEANACLTNVAKREAFDFERYKHFCIECKRIPYTKSANVSVNSGGSGFKAWNIITKSQTFKFWRNIRDVRERFNEEAKVIENCLRVNSMSRKESPLYNPASYLHRSKSMHRFEKETPVFNPSDYLYQGYPHMRGFGNKNASTFMYLQTASMLQNEKRGAQHSSPVFEVKTRSMFTNQFAFVPSRY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1966 269 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 256 - -
Tpr4g1966 269 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Tpr4g1966 269 PANTHER BNAC03G44070D PROTEIN 4 256 - -
Tpr4g1966 269 SUPERFAMILY Chaperone J-domain 30 104 IPR036869 -
Tpr4g1966 269 Gene3D DnaJ domain 39 162 IPR036869 -
Tpr4g1966 269 SMART dnaj_3 39 96 IPR001623 -
Tpr4g1966 269 CDD DnaJ 40 87 IPR001623 -
Tpr4g1966 269 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Tpr4g1966 269 PRINTS DnaJ domain signature 42 60 IPR001623 -
Tpr4g1966 269 PRINTS DnaJ domain signature 60 75 IPR001623 -
Tpr4g1966 269 PRINTS DnaJ domain signature 76 96 IPR001623 -
Tpr4g1966 269 PRINTS DnaJ domain signature 113 132 IPR001623 -
Tpr4g1966 269 Pfam DnaJ domain 40 101 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1966 Tpr-Chr4 20448909 20450641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1966 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 3.35e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1966 - - gmx:100801809 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1966 4 20448909 20450641 Tpr4g1966 4 20448909 20450641 ECH