Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1956 ATGAATCTTAGCAACGGTAAAGGATCCATTTCTACTGTTACTTCAACTGCTACTATGAAATCCGGTGAAGGTTCCGACCAGTTTCCGGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGTTACGCACGTGTCTTTATGAAGTTACGAAATGCAATCGAGCCGAGACTGCACTTTCACTCCTAAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAACTCTTAGAACACATTGGATTGGAAATGGACCTTCCGGTTATTATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACACGGTGCTTGTGATTATCTAATTAAACCTGTTCGTATCGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGGAAGAAAAAGAATGAGTGGAAAGATACGGAGCAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCGGATGATGGCGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGACGATAGAGATGACTCGTCAACGCTAAAGAAGCCTCGTGTTGTTTGGTCTGTGGAACTCCATCAACAGTTTGTGGCTGCTGTTGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGCCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGGTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACAATAACTTGAACAACTCATTTCTCAGTCCACAAGAGGCATCATTTGGTACGATTTCACCAATGAACGGTCTTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCCGCAGGACTTGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCGAGGTTGAGATTTGGAGAAGGGCAACAACAACTTTTAAGCAGCAATAAACCAACAAATCTTCTTCATGGAGTCCCTACTAACATGGAGCCAAAGCAGCTCGCAAATTTGCACCAATCTACACAATCCCTCGGCAATTTGAATATGCGAGTCACTGGTTCTTCTACGCAGGGTAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAATTACCAGTCCTCGTGTTCCGAGACTTCCAAACATCTTGGCGCAGCCTGCTTTGTCAAACGGAATTTCTGATGGTCTATTGGGGAGAAATGGCATAGCTAGTAGCAGCAGAGCACCTTCATTTAATCCTGTTTCACAGAGCTCTTCATATTTGAATTTTCCCATGAATCAAAGCACTGAAATGTCTGTTAGTAATTTCCCTCTCGGAAGCACTCCGGGTATATCTAGTATGACAAACAAAGGCTCGTTTCAACCGGACGTTAATTCGGGAATTAGAGCATCTGCTGGTTTTCCAAACTACGATATATTTAATGACCTGCACCAGCAGAAGTCCCGGGATTGGGGGATGGCAAGCCAAGGTCCAATGTATGATTCATCATCACATGCAAATCCTTTGCATGGTAACATCGATGTCTCTCCATCAGTTTTAGTCCAGCAGGGTTATTCTTCTAGTCAACAACCTGGACATAACAGAGATGCCTCTTTGATTGGAAAATCTCCTTTCTCTCTCGGTGAAGGCTTGGACCACAGTAATCTCCAAAATGGCGGTCAACACTTCAATCCCCTTATCGCTGAAAGTTCAACAAGGGTCAAGTCTGAAAGAGTTCCCGACGCGAGCTCCCAGACTAACCTCTTCCCTGATCATTACGGGCAGGAGGATCTCATGAGTGCACTTCTGAAACAGGAAGGTATTGTACAAGGCGAGAACGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 2028 0.4403 MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDGDYSSSANEGNWRNSRKRRDDEEDGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHNNLNNSFLSPQEASFGTISPMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSFENPRLRFGEGQQQLLSSNKPTNLLHGVPTNMEPKQLANLHQSTQSLGNLNMRVTGSSTQGNPLLMQMAQSQPRGQMLSEITSPRVPRLPNILAQPALSNGISDGLLGRNGIASSSRAPSFNPVSQSSSYLNFPMNQSTEMSVSNFPLGSTPGISSMTNKGSFQPDVNSGIRASAGFPNYDIFNDLHQQKSRDWGMASQGPMYDSSSHANPLHGNIDVSPSVLVQQGYSSSQQPGHNRDASLIGKSPFSLGEGLDHSNLQNGGQHFNPLIAESSTRVKSERVPDASSQTNLFPDHYGQEDLMSALLKQEGIVQGENEFDFDGYSLDNIPV* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1956 675 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Tpr4g1956 675 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Tpr4g1956 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 648 - -
Tpr4g1956 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Tpr4g1956 675 SMART REC_2 32 144 IPR001789 GO:0000160
Tpr4g1956 675 SUPERFAMILY CheY-like 31 153 IPR011006 -
Tpr4g1956 675 MobiDBLite consensus disorder prediction 152 176 - -
Tpr4g1956 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Tpr4g1956 675 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Tpr4g1956 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 648 IPR045279 GO:0009736
Tpr4g1956 675 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Tpr4g1956 675 MobiDBLite consensus disorder prediction 152 209 - -
Tpr4g1956 675 CDD REC_typeB_ARR-like 34 148 - -
Tpr4g1956 675 MobiDBLite consensus disorder prediction 188 209 - -
Tpr4g1956 675 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g1956 675 PIRSF RR_ARR_type-B 14 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tpr4g1956 675 Gene3D - 209 271 - -
Tpr4g1956 675 Gene3D - 32 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1956 Tpr-Chr4 20351207 20355750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1956 67 675 Response Regulator Gene Family AT3G16857 51.692 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr4g1956 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1956 - K14491 gmx:100814930 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1956 4 20351207 20355750 Tpr4g1956 4 20351207 20355750 ECH
Tpr4g1956 4 20351207 20355750 Tpr5g2854 5 51738172 51741529 PCT