Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1953 ATGGTGGTTGATCAGAGTGGAAAGGGATCAGAAGGTGAAGATTCAAACCCTAACACCGTCGTTTCATCCGAGAACAGTCCAAAGAAAATCTGTGCTGATTGCGGTACTTCCAAAACTCCTCTATGGCGTGGTGGACCTGCAGGACCAAAGTCACTGTGTAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATTTTGGGAATAAGCAAAGGAAACAACGAAGAAGGAACAAAAAAGGGGAAAAAGAGTAACAGTGGTAGTGGTGGAAGCAAAGTTGGGGATAATTTGAACATGAAACAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGCACAGATCGCATTGGAAGAAATTGGGAGAAGAAGAACAAGCGGCGGTGTTATTGATGTCTCTATCTTATGGATCTGCTGTTTATGCCTAA 429 0.4312 MVVDQSGKGSEGEDSNPNTVVSSENSPKKICADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTKKGKKSNSGSGGSKVGDNLNMKQRLLNLGKEVFMHRSHWKKLGEEEQAAVLLMSLSYGSAVYA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1953 142 ProSitePatterns GATA-type zinc finger domain. 31 56 IPR000679 GO:0006355|GO:0043565
Tpr4g1953 142 Pfam GATA zinc finger 31 65 IPR000679 GO:0006355|GO:0043565
Tpr4g1953 142 Gene3D - 26 90 IPR013088 GO:0006355|GO:0008270
Tpr4g1953 142 MobiDBLite consensus disorder prediction 9 29 - -
Tpr4g1953 142 CDD ZnF_GATA 30 84 IPR000679 GO:0006355|GO:0043565
Tpr4g1953 142 MobiDBLite consensus disorder prediction 67 98 - -
Tpr4g1953 142 PANTHER OS01G0976800 PROTEIN 3 141 - -
Tpr4g1953 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 65 - -
Tpr4g1953 142 SMART GATA_3 25 84 IPR000679 GO:0006355|GO:0043565
Tpr4g1953 142 ProSiteProfiles GATA-type zinc finger domain profile. 25 61 IPR000679 GO:0006355|GO:0043565
Tpr4g1953 142 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1953 Tpr-Chr4 20323222 20324352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1953 18 142 C2C2-Gata Transcription Factor Family AT3G06740 57.692 6.36e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr4g1953 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1953 - - aprc:113847917 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1953 4 20323222 20324352 Tpr4g1953 4 20323222 20324352 ECH
Tpr4g1953 4 20323222 20324352 Tpr6g0326 6 2658770 2661620 ECH