Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1950 ATGGGAAGAGCTCCTTGTTGTGAGAAGATTGGTTTGAAGAAAGGAAGGTGGACTGCTGAAGAAGATAAGATCTTAACTGATTATATTCAAGAAAATGGTGAAGGATCATGGAGATCCTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAACTACTTGAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAGGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCAGTAATAGCAGGACATTTACCAGGACGTACAGATAATGAGATAAAAAACTATTGGAACTCACATTTAAGGAGAAAAATTTACTGCTTCATGAAGTCATTAAATGAATCACTTCCACCAATTGACATAGCTGCTGTTAACCTAGCTGCTTCTAACAGAAGAAGAGCTAATAGAACAGCTCAACATGCACCAAAGCAAGATCAAAACAACACCAACAAAGAGTTACTTCATCAAGTTCAATTACCAACACTACATAAAAGAAAAGCAAATGCTTCTAGTGGAGAAGAACTACTACAAGGTTATAATACTAATAATTATGATACAACTAATTCATCATGTCCTAACATGAATGAATTAGTTGACCCTTTGGAACCTTTTGAATGGTTAGATGATGAAATTATTAAACTAAGTTACATGTTTGAAAGTGGCATACTTGTTAGTCCAGAACATGAGAATAATATTAATAATAATATTAATGTAACTAGTGATGATAATATTCTAGATCCTAATTGTGGAGTATTAATGGGAAACAATAATGATGGTGGTGTTTGGAGTTCATCAAATGGTGCTGAAAGTGGAGAGTGGAATAATAATAATAATAACACTACTAGTTGTAATTCATCTGTGAATTCTGTTTATGAATATCAGTGGCCTGATATGCATTTAGAAGGTAGTAGTGTTCAATCCTACAATCAACAATGGGACATTTGTGATCAACAAGGTCAAGATGTTAATGGCTTCTGGGGTACTTCCAATTATCAAGATGATACTAGCTTTTATCACTGA 1053 0.3495 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDIAAVNLAASNRRRANRTAQHAPKQDQNNTNKELLHQVQLPTLHKRKANASSGEELLQGYNTNNYDTTNSSCPNMNELVDPLEPFEWLDDEIIKLSYMFESGILVSPEHENNINNNINVTSDDNILDPNCGVLMGNNNDGGVWSSSNGAESGEWNNNNNNTTSCNSSVNSVYEYQWPDMHLEGSSVQSYNQQWDICDQQGQDVNGFWGTSNYQDDTSFYH* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1950 350 Gene3D - 13 66 - -
Tpr4g1950 350 Gene3D - 71 116 - -
Tpr4g1950 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr4g1950 350 CDD SANT 16 61 IPR001005 -
Tpr4g1950 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr4g1950 350 SMART sant 13 63 IPR001005 -
Tpr4g1950 350 SMART sant 66 114 IPR001005 -
Tpr4g1950 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr4g1950 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr4g1950 350 CDD SANT 71 112 IPR001005 -
Tpr4g1950 350 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr4g1950 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr4g1950 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr4g1950 350 PANTHER MYB TRANSCRIPTION FACTOR 2 301 - -
Tpr4g1950 350 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1950 Tpr-Chr4 20299222 20302035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1950 1 154 MYB Transcription Factor Family AT2G47460 67.901 2.93e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g1950 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1950 K09422 - gmx:100805532 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1950 4 20299222 20302035 Tpr4g1950 4 20299222 20302035 ECH