Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1944 ATGGCAAATATCTTATCTGGTCAACTAGTGGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTCCGAGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATCACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGCACTATTATATTATTTGACCGCAAAAAGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGTCAAGATAGCCCAAACTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAACACATTGTCCTAGTTCATTACCGTGAAACACAAGAGTCTCAAGGTTCTCCCATCACTCCCGTACATTCAAACTCTACTACTGCCTCTGATCCAACTGCACCGTGGATTTTGTCAGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTAGTGAGATTAATGACAATACAACAGTCAAAAGTCATGAACTGAGGCTCCATGAACTTAATACACTTGAATGGGATGACCTAGTGGCAAACGATCTTAACACCTCTACTGTGCCTAATGGAGGAAAACTTCCATATTTTGATCAACAAAATCAAATTTTACTCAATGGCAGTTTTAGCAATGTAGCCAGCAATGCATCTGCGGGAATTAATTCTTTCGATAATTCAACTCAGCCAATTGCAGCGAGCAATAGTGTTCCATACACTTTTTCAGGTGTTACTCTTCAGACAATTTACAATCAAGGAAATCAAAATGCCCAGAATAGTCATCATGTATCTTCAAGTGGTGTTGATTCGTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTGGGATCCTCAGCTACACCCGTTAATGAACCGTATTCATCTCTGGATGTGGATAATCAGCAACTTTCCCTTCCAGAACAAATATTTAATCTCACCGATGTGTCCCCTGTGTGGGTGTCTTCCACAGAGAAATCAAAGATTCTAGTGACTGGACTCTTTCATAAAGACTATTTGCACCTCCCAAAGTCCAATCTAATGTGTGTCTGTGGCGATACAAGTGTTCCTGTAGAAATTGTTCAGGAGGGGGTCTACCGATGTTGGGTACCACCGCATTCTCCGGGAATCGTGAATCTCTACTTGAGCTTTGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACGCCTGTTTTGCACGACCTAGTTGCTTCTGTGGAAGAGAAGAACTGGGATGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTCGATGTCATCTCTAGTAAAGTATCGCCTAGTAGACTAAAGGAGGCAAGAGAATTCTCCTTAAAGACGTCATTTATTTCTAATACTTGGCAATACTTATCGAAGTCAACTTTAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCACTGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAGAATTGTTTTAGGATCTAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCGCTGGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGAGAGAAAATGGTCGCAACTTTATTGTCAGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCCGGTGGATGTACTGCCGCTGATCTTGCTTATACAAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTTTAGTTGAGCAATTCAATGATATGAGCTTAGCGGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACTGAGGAACAGCTCTACCTTAAAGATACATTGGCAGCTTACCGTACAGCCGCCGATGCAGCAGCACGCATACAAGAAGCGTATAGGCAGCATTCCTTAAAGTTACAAACTGAGGCGGTTGAGTTTTCCAGTCCGGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAAACAAAGAAAGTGATGGCTGCTGCTGCTCGCATACAATATAGATTCCGTACATGGAAGATTCGTAGAAATTTTCTCAACCTGCGCCATCAGGCTATCAAGATTCAAGCTGCTTTCAGGTCCTTTCAACAACGGAAACATTATTGTAAAATCCTTTGGTCAGTTAGTGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGCGGGCTCCAGCTTAATACTGAGGAAGCAGATGGAGATCAGAATCAGCAAAGTGATGCAGAGGAAGATTTCTTTCGTACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTACAGGAGGATGAAGTTAGCCCTTAATCAAGCAAAGCTGGAACGAGAATATGAAAAAGTGCTTAGTAATGAAGTTGACATGGAAAAGAAGACCCAGTTTAGCCGAAGATCTTAG 2778 0.4132 MANILSGQLVGSEIHGFHTLQELDVPSIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIILFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDSPNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVHSNSTTASDPTAPWILSEEIDSGTKTAYASEINDNTTVKSHELRLHELNTLEWDDLVANDLNTSTVPNGGKLPYFDQQNQILLNGSFSNVASNASAGINSFDNSTQPIAASNSVPYTFSGVTLQTIYNQGNQNAQNSHHVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSATPVNEPYSSLDVDNQQLSLPEQIFNLTDVSPVWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDTSVPVEIVQEGVYRCWVPPHSPGIVNLYLSFDGHNPISQVVNFEYRTPVLHDLVASVEEKNWDEFRLQMRLAYLLFAKQQSLDVISSKVSPSRLKEAREFSLKTSFISNTWQYLSKSTLDNKIPFSQAKDALFGIALKNRLKEWLSERIVLGSKTTEYDAQGQSVIHLCAILEYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQYRFRTWKIRRNFLNLRHQAIKIQAAFRSFQQRKHYCKILWSVSVVEKAVLRWRLKRKGFRGLQLNTEEADGDQNQQSDAEEDFFRTSRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKVLSNEVDMEKKTQFSRRS* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1944 925 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 918 - -
Tpr4g1944 925 SUPERFAMILY Ankyrin repeat 543 664 IPR036770 -
Tpr4g1944 925 Gene3D - 533 671 IPR036770 -
Tpr4g1944 925 ProSiteProfiles Ankyrin repeat region circular profile. 602 630 - -
Tpr4g1944 925 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Tpr4g1944 925 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Tpr4g1944 925 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Tpr4g1944 925 ProSiteProfiles IQ motif profile. 767 795 IPR000048 GO:0005515
Tpr4g1944 925 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Tpr4g1944 925 ProSiteProfiles IQ motif profile. 789 817 IPR000048 GO:0005515
Tpr4g1944 925 SMART CG_1_2 28 146 IPR005559 GO:0003677
Tpr4g1944 925 Gene3D Immunoglobulins 362 457 IPR013783 -
Tpr4g1944 925 SUPERFAMILY E set domains 367 454 IPR014756 -
Tpr4g1944 925 Coils Coil 882 918 - -
Tpr4g1944 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 817 IPR027417 -
Tpr4g1944 925 Pfam IQ calmodulin-binding motif 793 809 IPR000048 GO:0005515
Tpr4g1944 925 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 918 - -
Tpr4g1944 925 SMART ANK_2a 602 631 IPR002110 GO:0005515
Tpr4g1944 925 SMART ANK_2a 641 672 IPR002110 GO:0005515
Tpr4g1944 925 SMART iq_5 765 787 IPR000048 GO:0005515
Tpr4g1944 925 SMART iq_5 788 810 IPR000048 GO:0005515
Tpr4g1944 925 SMART iq_5 868 890 IPR000048 GO:0005515
Tpr4g1944 925 Gene3D - 763 813 - -
Tpr4g1944 925 Pfam Ankyrin repeats (3 copies) 565 631 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1944 Tpr-Chr4 20240897 20248710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1944 28 902 CAMTA Transcription Factor Family AT3G16940 55.000 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tpr4g1944 Ank_2 1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1944 K21596 - gmx:100793970 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1944 4 20240897 20248710 Tpr4g1944 4 20240897 20248710 ECH
Tpr4g1944 4 20240897 20248710 Tpr5g2821 5 51212325 51220193 PCT