Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1942 ATGGCGAAGTCAAAGAATCACACCGCTCACAACCAGTCCTACAAGGCTCACAAAAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCAACCAAAGGAATGGATCCTAAGTTTTTGAGGAATCAGAGGTATGCAAGGAAGCACAACAAGAAAAATGGTGAAATTGCCACCGAAGAATAG 183 0.4372 MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEIATEE* 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1942 60 MobiDBLite consensus disorder prediction 1 32 - -
Tpr4g1942 60 MobiDBLite consensus disorder prediction 1 60 - -
Tpr4g1942 60 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Tpr4g1942 60 PANTHER 60S RIBOSOMAL PROTEIN L29 1 60 - -
Tpr4g1942 60 Gene3D - 1 60 - -
Tpr4g1942 60 PANTHER 60S RIBOSOMAL PROTEIN L29 1 60 IPR002673 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1942 Tpr-Chr4 20230961 20231522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1942 1 60 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 85.000 4.76e-32 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1942 K02905 - gmx:100499874 128.257