Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1912 ATGGCGAATTCTTCGGCAGCAGCATTTTTGGATGAGATTCCAAACAAGAAGAACAAAGAAAGTTGCATAATCAATTTCCCTTTTTCACCAGCTTTACCATCTTACAGTATCTTTGATATGATTCCTCCACCATCACAATCTGATGATAATCATCATCATCATCAAAAAGCTTCTTCCTTTGGTTACATGGACTTGTTAAGTACACAAGAATTCACTACTTCTTCAACTTTATTCGATTGGCTCCCCACCACTGATGATGACATGCAGCTGCCTCCTCTACCGGTACCGTCTCCGACCGCAACCTCCGAGGTTTTGAATAATCCAGCCACCCCTGTCTCTCTTTCGTCGTCGATTTCTTCGTCTTCCCATGAAGCTGGTGTTGCTAACAAATCAGTAGCAGAGAATGAAGATGAACTTGGATTTGAAGAACCAGGTGATAAAAATGGAGTTCATGGGATCAGATTAGTGGAGAATCAAAATGATCAACAAGATCAGACTAAGAAACAGGTGAAACCTGCAAGGAAGAGGAAGAACAATAAGCAAAGAGCACCAAGAATTACTTTCAAGACAAGGACCGATGTTGATCATATGGATGATGGTTATAAGTGGCGCAAGTATGGTCAAAAACCTGTCAAAAACAGCCCTTATCCAAGGAGTTATTACCGTTGCACCGCCATTGGTTGTGAGGTGAAGAAGCGTATAGAGCGTTCGGCCACTGAAGCTTCCGTGGTGCTAACCAGCTATGAAGGCAATCACATCCACTATTCCCCGGAAAGGATGCATGCTGCTAACTTTGGGATGATGCACAATCCTTCTGGTTTTCAAGAACAGATTCACCAACACCAGAATATAACTAGCGGTGTTGGTGATGCTGTTGTTGGAAACCAAGTTGCAATGTCTCAATATCAACAGTATCAACAATTTCTAGATCAGAATCAGAATGTGCGTCAGCAGCAGCAACCAGTGCCATCTTTGTTATATAATAATGACTATAACAACTCCTTCAACACTGCTCCACCTGTGAGTGTTGTTAACTCTGCTGATAATTTTATGGACTCTTCAGCATCTTTTGGTGGGTTGCTTCAAAATCAAGTGAATTATGGTGAAGATAATCTGGTGAGGAACCATGGAGGACTTCTTCAGGACATGATTGTACCAATGGAGATGGGAGGAGCTAGAGCTGGAGTTCGAGTTGGAGATGGAACTTCAAGTACATGA 1218 0.4228 MANSSAAAFLDEIPNKKNKESCIINFPFSPALPSYSIFDMIPPPSQSDDNHHHHQKASSFGYMDLLSTQEFTTSSTLFDWLPTTDDDMQLPPLPVPSPTATSEVLNNPATPVSLSSSISSSSHEAGVANKSVAENEDELGFEEPGDKNGVHGIRLVENQNDQQDQTKKQVKPARKRKNNKQRAPRITFKTRTDVDHMDDGYKWRKYGQKPVKNSPYPRSYYRCTAIGCEVKKRIERSATEASVVLTSYEGNHIHYSPERMHAANFGMMHNPSGFQEQIHQHQNITSGVGDAVVGNQVAMSQYQQYQQFLDQNQNVRQQQQPVPSLLYNNDYNNSFNTAPPVSVVNSADNFMDSSASFGGLLQNQVNYGEDNLVRNHGGLLQDMIVPMEMGGARAGVRVGDGTSST* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1912 405 Gene3D WRKY domain 184 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g1912 405 SUPERFAMILY WRKY DNA-binding domain 190 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g1912 405 ProSiteProfiles WRKY domain profile. 192 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g1912 405 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 58 385 - -
Tpr4g1912 405 MobiDBLite consensus disorder prediction 170 184 - -
Tpr4g1912 405 MobiDBLite consensus disorder prediction 111 128 - -
Tpr4g1912 405 MobiDBLite consensus disorder prediction 111 185 - -
Tpr4g1912 405 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 385 IPR044810 GO:0003700
Tpr4g1912 405 SMART WRKY_cls 197 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g1912 405 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1912 Tpr-Chr4 20003209 20005635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1912 162 262 WRKY Transcription Factor Family AT4G18170 55.446 1.60e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g1912 WRKY 5.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1912 - - mtr:MTR_4g122530 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1912 4 20003209 20005635 Tpr4g1912 4 20003209 20005635 ECH