Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1908 ATGAATTACAACCGTCGTAGTCCCGGCGGTTTCCGTGCCGCTCCTCCCCATCGTAATTTTGATAGTCCCCCTCGTTGGTCACCTGGTAGGGTTGGAGGTGGAGGTTTCCGTCCACCTCCTCCCGGAGATGCTTTCAGGCCGATGAGCAATGAAGGTCCTGGTGAATTTGGATTCAATAATCATCAGCCATCGTCGTTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCTGGACGTGGTGCTTCACCGGATCGCTTTGACGGTGGAAGTTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAACCGAGGAAGATATTCGTCCTTTGTTTGAGGAACACGGGAATGTCGTTGAGGTCGCCTTAATTAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAAATTACCCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAATAAACAGGCTAGCGTAAAAGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATACTCGCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATACACAATGAGAGGTTGTGATCAACCACTGATTGTCCGTTTTGCTGATCCTAAAAGACCTCGTCAAGGAGATTCCAGAGGTCCTGCATTTGGAGCTTCAGGATTTGGTCCTAGATTTGATTCACCGGGCACTAGACTTCCATCAAATAATTCTGATTCTATGGGTGACCATATGCCTCCTCCTAATGCTTGGCGTCCCAACCATCAACCAAACACGGGGCCATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATTGATACCAAGATCTGGCGACATGGCATTGCCTATAAATGCAGGCGGTCCTATGAGTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAGCTCAGTCTCCGTCAGCAATGCCACAACAGAATTTCAACCAACCTCTACCGCAAATTCCACCAGGCAATCAACAAAGACCTCCATCACAGAAACCTATCCACTCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAATCTCCGATGCCCTATCCACAAACATCGACACTACCATCTCTCAGGCAGCACAGTCAGCCACAACCTCTCTCTGCTGGTCCGCAGGGACCGGGCATAAGTGCACAGTTTTCAGTTTCTCAGCCTCAAACTCAGCAGAGTAGTTTGCCTGCTACATTTCCTCGGACCTCTCTTGATACCAGCATTCAATCTAATACAACATTGACTACTCCAAGTAGACAGCAAGTTCCTCCCTCTATGCAGCAGCAACAGTCACAACCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGTTGGTGTCACAACAAACTCAGACTTTACAAGCAAGCTTCCATTCATCTCAGCAGGCCTTCTCTCAGCTTCAACAACAATTACAGATGATACAACCATCCAGTCAAGCATCAACATTGCAGCATCACGTAGAACCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCCACGACCGGCACTCATGTGGCTGTACCTGCTCCAGGTGCTCCTTCATCAACATCTGCTGCTTCTTCTGTACAAGCAATAGGCCAGAACACAACTCTTGCAAAATGTAATTGGACAGAGCATTTATCTCCCGAGGGCTTTAAATACTACTATAATAGTGTGTCTGGGGAAAGCCGGTGGGAGAAACCCGAAGAGTTGACATTATTTGAACAGCAAAAGCAACAGCTCAGGCAGTCTGCTCAGCAGTCACAGCCTTCAATACCACCCACCCAGCAAATTCCATTAAACCAGCAGGTTCAGCCTCAAAGTCATTTCCGAGAACAACAGGTTCAGCCTCAAATTCCACAAAACCAACAAGTTCAGCCTCAAATTCCACAAAACCAACAGGTTCAGCCCCAAAGCCATTTTCGAGAACAAGCTCTCCACCATCAACAAATACAGCAACCATCCTCATTCCAGGCGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGCTATAAACAGTTACAGTCGTCATTTGTTTCTGCTGGTAATCCCGGACGTTATTCACAGGGTATTAATACTACACAAGAGCAGATGTGGAAAAACAGGCCTGCAGGAGTCTGA 2313 0.4687 MNYNRRSPGGFRAAPPHRNFDSPPRWSPGRVGGGGFRPPPPGDAFRPMSNEGPGEFGFNNHQPSSLSGQKRGFPFSGRGASPDRFDGGSFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQITLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGASGFGPRFDSPGTRLPSNNSDSMGDHMPPPNAWRPNHQPNTGPSFNAGFHGMGPPLIPRSGDMALPINAGGPMSGMGVSIDGRFQAQSPSAMPQQNFNQPLPQIPPGNQQRPPSQKPIHSSQEFPPSHQLYPQSPMPYPQTSTLPSLRQHSQPQPLSAGPQGPGISAQFSVSQPQTQQSSLPATFPRTSLDTSIQSNTTLTTPSRQQVPPSMQQQQSQPLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQASTLQHHVEPTKTQSQWGGTVSHATTGTHVAVPAPGAPSSTSAASSVQAIGQNTTLAKCNWTEHLSPEGFKYYYNSVSGESRWEKPEELTLFEQQKQQLRQSAQQSQPSIPPTQQIPLNQQVQPQSHFREQQVQPQIPQNQQVQPQIPQNQQVQPQSHFREQALHHQQIQQPSSFQAAYGVTGHQNVQELGYKQLQSSFVSAGNPGRYSQGINTTQEQMWKNRPAGV* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1908 770 ProSitePatterns WW/rsp5/WWP domain signature. 604 629 IPR001202 GO:0005515
Tpr4g1908 770 Gene3D - 88 177 IPR012677 -
Tpr4g1908 770 MobiDBLite consensus disorder prediction 416 438 - -
Tpr4g1908 770 Pfam WW domain 603 629 IPR001202 GO:0005515
Tpr4g1908 770 MobiDBLite consensus disorder prediction 473 506 - -
Tpr4g1908 770 SUPERFAMILY RNA-binding domain, RBD 76 176 IPR035979 GO:0003676
Tpr4g1908 770 CDD RRM2_FCA 183 262 IPR034645 -
Tpr4g1908 770 CDD WW 601 631 IPR001202 GO:0005515
Tpr4g1908 770 ProSiteProfiles WW/rsp5/WWP domain profile. 604 631 IPR001202 GO:0005515
Tpr4g1908 770 SUPERFAMILY WW domain 603 635 IPR036020 GO:0005515
Tpr4g1908 770 SUPERFAMILY RNA-binding domain, RBD 182 283 IPR035979 GO:0003676
Tpr4g1908 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 172 IPR000504 GO:0003723
Tpr4g1908 770 PANTHER RNA BINDING PROTEIN 48 660 - -
Tpr4g1908 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Tpr4g1908 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 250 IPR000504 GO:0003723
Tpr4g1908 770 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 48 660 - -
Tpr4g1908 770 MobiDBLite consensus disorder prediction 1 58 - -
Tpr4g1908 770 Gene3D - 178 270 IPR012677 -
Tpr4g1908 770 MobiDBLite consensus disorder prediction 445 464 - -
Tpr4g1908 770 SMART rrm1_1 183 258 IPR000504 GO:0003723
Tpr4g1908 770 SMART rrm1_1 92 168 IPR000504 GO:0003723
Tpr4g1908 770 MobiDBLite consensus disorder prediction 663 714 - -
Tpr4g1908 770 Gene3D - 598 649 - -
Tpr4g1908 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 262 IPR000504 GO:0003723
Tpr4g1908 770 SMART ww_5 599 631 IPR001202 GO:0005515
Tpr4g1908 770 MobiDBLite consensus disorder prediction 262 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1908 Tpr-Chr4 19977756 19987992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1908 89 268 Eukaryotic Initiation Factors Gene Family AT1G71770 26.804 4.06e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1908 - - gmx:100798390 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1908 4 19977756 19987992 Tpr4g1908 4 19977756 19987992 ECH