Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1887 ATGAATGTTTTTGTATTTGTCCTCCAATTCCTATGTTTCATTCTTTTAACTACCACTTCTTCTTTGTTCATTAAAGCATATGAAATAAATGCTGAAAAAACCTATGAATCTGATAGAATAATTGATCTACCAGGACAACCTTCAGCCCCATCTGTCTCACACTTTTCTGGTTACATCACTGTCAATGAAGAACATGGGAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTGAACCCTCCAATAAGCCTTTGCTTCTTTGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGATATGGTGCTCTGGTTGAGATAGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTATTATTCAATCCAAACTCTTGGAATCAAGAAGCAAATTTATTATTTGTGGAGTCCCCTGTTGGAGTTGGCTTTTCTTACACAAACACTTCTTCTGATCTCACCATTTTAGAGGATCATTTTGTGGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAAATTTCCACAGTTTCAATCCAGGGACTTTTTCATAGCTGGAGAAAGCTATGCTGGCCACTATATCCCTCAGCTTGCAGAAGTAATCTTTGACAGAAACAAAGATAAAACCAAATACTCCTTTATTAATCTTAAAGGTTTTATTGTAGGAAATCCAGAAAGTGATGATTACTATGATTATAAAGGCATAGTAGAATATGCTTGGAGTCATGCAGTTATATCAGACCAACATTATGAAAAAGCAAAACAAGTTTGTGATTTTAAAAAATCTGAATGGTCTAATGAGTGCAATCAAGTCATGATTGAACTCTTCCATGAGTACTCAGAAATTGACATATACAACATTTATGCTCCATCATGTCGTTCAAATACTACATCCTCAGTAACAAGTGTTAATGCCCCTCAATCATTTAAAGAGGTGAAAAATGATTATAGATTGAAGAGGATGAGAATTTTTGGAGGCTATGACCCTTGTTATTCCAATTATGCAGAAGAATTTGTCAATAGGGTAGATGTTCAATCATCTTTTCATGCAAAAAATACTATAAGAGATAACAGTAACATAACATGGAAGGTTTGCAATGATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCTGTGCTACCTATCTACACCAAACTCATCAAGGGTGGCCTTAAAATATGGATTTACAGTGGAGATGCAGATGGTAGATTACCTGTGATAGGGACACGATATGGCATTGAGGCTCTTGGGTTACCTCTAAAGTCAACTTGGAGGTCATGGTACCATAATAATCAGGTTGGAGGAAGAATAGTGGAGTATGAAGGATTGACATATGTGACAGTGAGAGGAGCTGGTCACTTAGTGCCTCTCAACAAACCAACTGAAGCTCTTTCTCTTATTCATTCTTTCCTAACTGGAGATCATCTCCCTACTACACGTTAA 1446 0.3707 MNVFVFVLQFLCFILLTTTSSLFIKAYEINAEKTYESDRIIDLPGQPSAPSVSHFSGYITVNEEHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGYGALVEIGPLLVNKNGEGLLFNPNSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDAYNFLVNWLQKFPQFQSRDFFIAGESYAGHYIPQLAEVIFDRNKDKTKYSFINLKGFIVGNPESDDYYDYKGIVEYAWSHAVISDQHYEKAKQVCDFKKSEWSNECNQVMIELFHEYSEIDIYNIYAPSCRSNTTSSVTSVNAPQSFKEVKNDYRLKRMRIFGGYDPCYSNYAEEFVNRVDVQSSFHAKNTIRDNSNITWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRLPVIGTRYGIEALGLPLKSTWRSWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPTEALSLIHSFLTGDHLPTTR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1887 481 SUPERFAMILY alpha/beta-Hydrolases 40 475 IPR029058 -
Tpr4g1887 481 ProSitePatterns Serine carboxypeptidases, histidine active site. 444 461 IPR033124 GO:0004185
Tpr4g1887 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 PANTHER CARBOXYPEPTIDASE 11 479 - -
Tpr4g1887 481 Gene3D alpha/beta hydrolase 32 303 IPR029058 -
Tpr4g1887 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 479 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 Gene3D - 330 369 - -
Tpr4g1887 481 Gene3D - 380 474 - -
Tpr4g1887 481 Pfam Serine carboxypeptidase 44 473 IPR001563 GO:0004185|GO:0006508
Tpr4g1887 481 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1887 Tpr-Chr4 19874665 19879090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1887 354 477 Calmodulin-binding Proteins AT2G22960 32.800 1.27e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1887 K16297 - gmx:100815141 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1530 2 18095004 18095879 Tpr4g1887 4 19874665 19879090 PCT
Tpr4g1887 4 19874665 19879090 Tpr2g1531 2 18105689 18106612 PCT