Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1880 ATGAACAACTACTCTTACTCCTCCTTCTCTCCCACCTCACTCACCTCTGATCAAGAACTCTCCGTCATCGTCGCCGCCTTAACAAACGTCGTCTCCGGTTCAACCTCAACAGATTTTCATCTTCCTAATAATTCAGCCGTTGGAACCACCAGCGGCAGCTTAGAACGAATAGTTCCACCGGCAAACATGGAAACCTGCCGTGAATGTAACATAGCAGGATGTTTAGGATGCAATTTCTTCCCGGAAGAGAATAAGAAAAAACAAAAGAGAGCTAAGAAGAAGTACAGAGGAGTTAGACAGAGACCATGGGGGAAATGGGCAGCTGAGATTCGCGATCCGAGACGCGCAACTCGTGTTTGGTTAGGAACTTTTACTACTGCTGAAGAAGCTGCTAGAGCTTATGATAATGCCGCGATTGAGTTCCGTGGACCGAGGGCTAAACTCAATTTTCCTCTTGTTGATGAGTCTCTTAAGCATGTAGAGGAGCCAGAAATGGTTGTTGATGATCCTTCTCATAATTTCAAAGATGAGAATTTGAATCAGGAAATGCAAACAGAGACAACTGTTGAATTTGGGAACAATAGTAATAATGATTTCTGGGATAGGATTGGAGAAGCTGATTTTCAACAACTTATGAGGTTAATGGATTTTGGTGGAGATTCTTCTGGTTCAAAGAACAGGGAACAGTTTTAA 693 0.43 MNNYSYSSFSPTSLTSDQELSVIVAALTNVVSGSTSTDFHLPNNSAVGTTSGSLERIVPPANMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKHVEEPEMVVDDPSHNFKDENLNQEMQTETTVEFGNNSNNDFWDRIGEADFQQLMRLMDFGGDSSGSKNREQF* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1880 230 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 224 - -
Tpr4g1880 230 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Tpr4g1880 230 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Tpr4g1880 230 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Tpr4g1880 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 8 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1880 Tpr-Chr4 19768855 19769842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1880 14 154 AP2-EREBP Transcription Factor Family AT4G34410 48.864 1.19e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g1880 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1880 - - gsj:114420690 271.937