Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1858 ATGGCACAACAAACCAACGGTGGAGATCTGAATCAGAATAACAGCAACAACAACAACAACCAGAATCAGACACCTCAGCAGCAGCAGCAGCATCAGCAGCATCAGCAGCAGTGGGCGGCGGCGCAACCGCATCAGTATCAACAACAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCACAGCATTACATGCCGTATGTTCATCCTCATCATTATCAGCAGCCGCCTCATCAGCAACAGGTGTCTCCGCCGCCGAATCAGAGTCACCATAACCATAATCATCATCATCAGCAGCAGCAACATCAGTATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGTTTTGCTCATACCGGCGAGGTTGTATCGGCAAAAGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGGTACTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGTGCTGCTGGTGGTGGTGGTGGTGGTGAAAGGCGTTCTTCTGAAGCTACTTCCGATCTCTCCGTTTTTGTGGGAGACTTAGCCATAGATGTTACTGATGCTATGCTGCAAGAAGTGTTTGCTAGCAGATTCTCTTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCGAAAGGCTATGGCTTTGTTAGGTTTGGGGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACGCCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCACAAGTGTTGGCTGGTGGTGGTGGACACTCATCCAACGGTGCTGTGGCCCAAGGTTCCCAATCTGACGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGGGATGTCATCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGGTTTGTTCAACTGGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGAACAGTGATTGGAAAGCAGACGGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAATGACTCTAATGGACACTACGGCGGTGGTTATGGAGGTCATGGATACGGAGGCGGCCATGGATATGCTGCTAGACAGAATCAGGATATAGCTATGCAACCTGCTGCTGCAGTTCAAGGGGCTTCGTAA 1398 0.4628 MAQQTNGGDLNQNNSNNNNNQNQTPQQQQQHQQHQQQWAAAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQPPHQQQVSPPPNQSHHNHNHHHQQQQHQYQQKQVSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRNDSNGHYGGGYGGHGYGGGHGYAARQNQDIAMQPAAAVQGAS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1858 465 Gene3D - 325 451 IPR012677 -
Tpr4g1858 465 MobiDBLite consensus disorder prediction 20 41 - -
Tpr4g1858 465 SUPERFAMILY RNA-binding domain, RBD 335 444 IPR035979 GO:0003676
Tpr4g1858 465 Gene3D - 213 317 IPR012677 -
Tpr4g1858 465 Gene3D - 124 204 IPR012677 -
Tpr4g1858 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 416 IPR000504 GO:0003723
Tpr4g1858 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 205 IPR000504 GO:0003723
Tpr4g1858 465 CDD RRM2_SECp43_like 224 303 - -
Tpr4g1858 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 304 IPR000504 GO:0003723
Tpr4g1858 465 CDD RRM3_NGR1_NAM8_like 343 414 - -
Tpr4g1858 465 MobiDBLite consensus disorder prediction 84 99 - -
Tpr4g1858 465 SUPERFAMILY RNA-binding domain, RBD 223 329 IPR035979 GO:0003676
Tpr4g1858 465 SUPERFAMILY RNA-binding domain, RBD 89 208 IPR035979 GO:0003676
Tpr4g1858 465 CDD RRM1_SECp43_like 126 206 - -
Tpr4g1858 465 SMART rrm1_1 226 300 IPR000504 GO:0003723
Tpr4g1858 465 SMART rrm1_1 345 412 IPR000504 GO:0003723
Tpr4g1858 465 SMART rrm1_1 126 201 IPR000504 GO:0003723
Tpr4g1858 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 409 IPR000504 GO:0003723
Tpr4g1858 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 194 IPR000504 GO:0003723
Tpr4g1858 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 296 IPR000504 GO:0003723
Tpr4g1858 465 MobiDBLite consensus disorder prediction 83 120 - -
Tpr4g1858 465 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 36 464 - -
Tpr4g1858 465 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 36 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1858 Tpr-Chr4 19461851 19467203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1858 126 409 Eukaryotic Initiation Factors Gene Family AT2G36660 24.828 3.26e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1858 - - mtr:MTR_4g086600 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1858 4 19461851 19467203 Tpr4g1858 4 19461851 19467203 ECH