Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1853 ATGGGAGGTTGCACTTCAAAGCCACATAAACCAAACCCATATGCGCTTAGAGAAACAGAAACTGACCCAACACAAATCCCAAAAACCCCACTAAGTCCCGACGGTGAAAACCATCGTCGGAAAGATGACGTCATCGCCGGAAAAAAGTCTCCGTTTTTTCCTTTTTACAGTCCAAGTCCAGCTCGCTTCCTGAAGAAGTCTCCGTCGACGACTCCTAGCCGGAGTACTAGCTCGACGCCGAGGAGGTTTTTCCGGCGAGCTTTTCCTCCACCTTCTCCGGCGAAACATATAAGGGCTGTGTTGGCTAGGAGACAAGGGAAGAAGGAAACTGCGGCGATACCGGAAGATTCGGAGGAGGGTGCTGGTGATTTGGACAAGAGATTTGGATTCTCAAAGGATTTTAGTAGTAGGTTGGAGGTTGGAGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTTCTGCTAAGTTCAAGAAGGGTGAGTTTAAGGGTCAACAAGTTGCTGTAAAAGTTATCTCTAAAGCAAAGATGACAACAGCAATTGCAATTGAAGATGTTAGAAGGGAGGTGAAAATATTGCGAGCTTTGAACGGTCATAGTAATTTGGTACAATTTTATGATGCATTTGAAGACCAAGAAAACGTCTACATTGTAATGGAGTTATGTGAAGGGGGAGAGCTATTAGATATGATACTATCAAGAGGAGGGAAATATACAGAAGACGATGCAAAGGCTGTCATGGTACAAATACTAAATGTCGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAACCTGAGAATTTTTTGTACACTTCAAAGGATGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGGTTTTCCTTCGCATGTTCTTGCTTTTTCTATTAACATCCTTTTCCTCATAAGAGTAGCAATTTTCTTAATTTTATCATCATGTCATACAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTTCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGCAGTCGTCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAGGCTTCGATGAAGCTCCCTGGCCATCTTTATCTTCAGAAGCAAAAGATTTTGTCCAGCGCCTACTGAATAAGGACCCTCGGAAGCGAATATCTGCTGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAACGATGTAAAAGTTCCGCTTGATATCTTAATATTTAAACTCATGAAGACTTATATGAGATCATCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTATCAAAGACATTAACTGCTGACGAACTCTATTATCTGAGGGAACAATATGCACTGTTGGAACCAAGCAAAAATGGGAGCATATCCTTGGAGAACATTAACAAGGCCTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGTATCACAGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGACTTTGAAGAATTCTGTGCTGCTGCACTAAGTGTGCACCAACTTGAAGCTCTTGATCGTTGGGAACAACATGCCCGTTGCGCATATGAACTTTTTGAAAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCGTCTATTCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACCGATGGGAAGTTAAGCTTTCTCGGGTTTGTCAAATTATTGCACGGTGTATCTAGCCGAAGCCTTCCAAAGGTTCAGTTATGA 1872 0.4225 MGGCTSKPHKPNPYALRETETDPTQIPKTPLSPDGENHRRKDDVIAGKKSPFFPFYSPSPARFLKKSPSTTPSRSTSSTPRRFFRRAFPPPSPAKHIRAVLARRQGKKETAAIPEDSEEGAGDLDKRFGFSKDFSSRLEVGEEVGRGHFGYTCSAKFKKGEFKGQQVAVKVISKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDAFEDQENVYIVMELCEGGELLDMILSRGGKYTEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPGFPSHVLAFSINILFLIRVAIFLILSSCHTDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEAPWPSLSSEAKDFVQRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQYALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLPKVQL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1853 623 PANTHER CDPK-RELATED KINASE 2 38 616 - -
Tpr4g1853 623 ProSiteProfiles Protein kinase domain profile. 138 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1853 623 MobiDBLite consensus disorder prediction 103 122 - -
Tpr4g1853 623 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 616 - -
Tpr4g1853 623 MobiDBLite consensus disorder prediction 33 47 - -
Tpr4g1853 623 Gene3D - 448 539 - -
Tpr4g1853 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Tpr4g1853 623 Gene3D Phosphorylase Kinase; domain 1 140 226 - -
Tpr4g1853 623 CDD STKc_CAMK 139 429 - -
Tpr4g1853 623 Gene3D Transferase(Phosphotransferase) domain 1 227 442 - -
Tpr4g1853 623 SUPERFAMILY EF-hand 461 611 IPR011992 -
Tpr4g1853 623 MobiDBLite consensus disorder prediction 1 51 - -
Tpr4g1853 623 Gene3D - 455 609 - -
Tpr4g1853 623 MobiDBLite consensus disorder prediction 63 82 - -
Tpr4g1853 623 SMART serkin_6 138 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1853 623 Pfam Protein kinase domain 139 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g1853 623 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Tpr4g1853 623 SUPERFAMILY Protein kinase-like (PK-like) 136 467 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1853 Tpr-Chr4 19429485 19434826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1853 1 618 EF-hand Containing Proteins AT3G50530 73.783 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr4g1853 Pkinase 5.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1853 - K00924 cam:101492337 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1853 4 19429485 19434826 Tpr4g1853 4 19429485 19434826 ECH