Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1847 ATGAGTTACATCTTTTATGACAAAATTTCTTCATCTGGGTATGATGATTTGGGCTTATTGAATCAATCTTTGCATAACTTTGGAACTTCTAATGGTGTTTTAGAGAGTGGGAAGGGAAAGGTGGTGAAGTGCCCTATAACTGAAAGAGTTGGTAAAGATGATATTTCTGAGGCTAAAGCTTTAGCTGCTTTGAAGAACCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAACGGTCATCTTGCAACATTGCGTGGCCTTGTGACTTCCACTGATCAAAAGATGGACAAAGCCACATTACTTGCTAAAGTGATTTGTCAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTCATTCCAATGGAAGATGATGAAGTGAAAGTTGAACCATATGATATTGAATTAGGACATGGATGCATGTCTTACAAAGCAACTATCTGCTGTGATTACCAACCTGAGATACTTTCTGACCTCAAAAAAGCACTTGATGCACTTCAACTTCAACTAGTGAAGGTTGAAATGTCAACATTGGAAAACAGAATGAAGAATGTGCTTGTCTTTACATGTTGTAAAGGGGATAATAGTGTTAATGTTGAAACATGTAAAAGTATTGCAAATGTTGTTCATAAAGCATTAGATTCTGTGTTGGAAAAGGCTTATAGTTCAATGGAGTTTTCACTTAGAACTTCATATCCAAACAAAAGGAGAAGAATGTGCTTTGCTGAAACATCTACTTCCTCATGCAACCATGGATCTTGTTGCTCATGCTAA 789 0.3701 MSYIFYDKISSSGYDDLGLLNQSLHNFGTSNGVLESGKGKVVKCPITERVGKDDISEAKALAALKNHSEAEKRRRERINGHLATLRGLVTSTDQKMDKATLLAKVICQVKELKKNAMEASKGFLIPMEDDEVKVEPYDIELGHGCMSYKATICCDYQPEILSDLKKALDALQLQLVKVEMSTLENRMKNVLVFTCCKGDNSVNVETCKSIANVVHKALDSVLEKAYSSMEFSLRTSYPNKRRRMCFAETSTSSCNHGSCCSC* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1847 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 114 IPR036638 GO:0046983
Tpr4g1847 262 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Tpr4g1847 262 Gene3D - 58 121 IPR036638 GO:0046983
Tpr4g1847 262 CDD bHLH_AtAIG1_like 57 136 - -
Tpr4g1847 262 PANTHER DNA BINDING PROTEIN-LIKE 23 254 - -
Tpr4g1847 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
Tpr4g1847 262 Coils Coil 161 181 - -
Tpr4g1847 262 PANTHER TRANSCRIPTION FACTOR BHLH30 23 254 IPR045847 GO:0003700|GO:0006355
Tpr4g1847 262 SMART finulus 68 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1847 Tpr-Chr4 19344245 19347853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1847 59 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.113 1.30e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g1847 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1847 - - gmx:100804756 350.903