Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1826 ATGATAGCCAGCTCCTTCAACAATGCTGATTCTATGTTTTCAAATGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGCCTTTGTTCCGTTGATCAAAGCAATTATAACTCTATTGCTTCTAAAAAGCAAAAGCCTGATTTATCGATCAGCACTAAGGATAGGAAGGAAAAGCTCGGTGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCGATGGACTACATAGAGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTCGAAACTTCACCAGCCGCCCAGATGCAGGGTACAGAGTCATGCAGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCTGAGGGCAATGGTGCAGACATCTGGGCACCAATCAAGACCACTTCACCTAAACATGAGAACGATGTCTCGCAAATTCAGTGA 504 0.4266 MIASSFNNADSMFSNEEGIDVRKMMGHKRSLCSVDQSNYNSIASKKQKPDLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIEFLHKQVKLLSAPYLETSPAAQMQGTESCSSLRSRGLCLVPVSFTIGVAEGNGADIWAPIKTTSPKHENDVSQIQ* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1826 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Tpr4g1826 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 147 - -
Tpr4g1826 167 Gene3D - 44 116 IPR036638 GO:0046983
Tpr4g1826 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Tpr4g1826 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 113 IPR036638 GO:0046983
Tpr4g1826 167 SMART finulus 52 101 IPR011598 GO:0046983
Tpr4g1826 167 PANTHER TRANSCRIPTION FACTOR BHLH154 24 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1826 Tpr-Chr4 19097983 19102757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1826 24 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.595 7.07e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1826 - - gmx:100809747 265.388