Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1811 ATGGGTTGTGTTGTTCCTTCAGAACTGAGTTTAGATTTAAGACCAGCTTTCGTCCCCAAAACCATCGCTAATTTCCTCTATCACCTTTCCACCCTTCAAAATACCTCCGATAAACTCTCCAAACTCCACGATTTCGTCTCCAGATTCGAAGAAGAACTCAATAAGATCCAAGCTTTCAAACGAGAACTCCCTCTTTGCATGCTTCTCTTAATCGATGCAATTTCAGTTTTGAAAGAAGAATTGGAAAAATGTCGAACTCAGAATTCTGTTCCTGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAAAGTCAAGAAAATAACAATAATGATGATAGAGAAAACAACAATAACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAATAACAACACAACTACTATTAATAATAATGTTGTTGATCATGATAAACATAACAATAATCATAATAAATTAGAAACTAAGAAAAGGGATGAGGAAGGACAATCTATGACTATAGCTGAAGAAACTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCTTTTTCGACATATTCTTCTGTTCCGGTGACAACGGTGAAACTATCGGCACCTAAAGAAGAGAAGGAAGAAACTGTTATGAATGGATTCTCTCTTCTTAGTTCTGGGGTGAAAAGTTTGAGGGAAGGATTTGGTTCGAAGGGATCGAGAAGCAGTTCTAATAGGGCAGTTTCGTCTTCTCCTCCAACCGTGCAGCCGAGTTTGCGCACTCCGCCACTTCAGCCACAACAGACTTCTAGAAAACAGAGGAGATGCTGGTCGCCTGAATTGCACCGGCGATTTGTCAATGCATTGCAGAAGCTTGGAGGTACTCAAGCAACTCCAAAGCAAATTCGAGAACTTATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGGCTTCATACGCGGAGAGTTCCAGCTACAAGTGGTAATGAGTCTGTCGTAGTTCTTGGAGGCTTATGGATGTCTCAAGAACAATACAACGACTCATCCAAAGGTAGCAGTACAGCATCTGGTTCTCCACAAAGTCCGCTTCATTTAGCTACAGGATCCCGAGGAGGGACATCCCCAACTGAAGGTGATAGCATGGAAGATGACGAAGATGCAAAATCCGAGAGTTATAGCTGGAAAAGTCATATTCATAGACATGGAAAAGTTGGTGTATAG 1248 0.4038 MGCVVPSELSLDLRPAFVPKTIANFLYHLSTLQNTSDKLSKLHDFVSRFEEELNKIQAFKRELPLCMLLLIDAISVLKEELEKCRTQNSVPVLEEFIPLKKEIDQSQENNNNDDRENNNNNECRDKKNWMSSVQLWNNNTTTINNNVVDHDKHNNNHNKLETKKRDEEGQSMTIAEETFQSCSSNRNGGSAFMPFSTYSSVPVTTVKLSAPKEEKEETVMNGFSLLSSGVKSLREGFGSKGSRSSSNRAVSSSPPTVQPSLRTPPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGTQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATSGNESVVVLGGLWMSQEQYNDSSKGSSTASGSPQSPLHLATGSRGGTSPTEGDSMEDDEDAKSESYSWKSHIHRHGKVGV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1811 415 MobiDBLite consensus disorder prediction 103 123 - -
Tpr4g1811 415 Coils Coil 150 170 - -
Tpr4g1811 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 274 328 IPR006447 GO:0003677
Tpr4g1811 415 MobiDBLite consensus disorder prediction 354 415 - -
Tpr4g1811 415 PANTHER TRANSCRIPTION FACTOR HHO6 8 408 - -
Tpr4g1811 415 Gene3D - 270 332 - -
Tpr4g1811 415 MobiDBLite consensus disorder prediction 238 276 - -
Tpr4g1811 415 MobiDBLite consensus disorder prediction 354 385 - -
Tpr4g1811 415 MobiDBLite consensus disorder prediction 103 127 - -
Tpr4g1811 415 Pfam Myb-like DNA-binding domain 276 326 IPR001005 -
Tpr4g1811 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 408 IPR044787 GO:0003700|GO:0006355
Tpr4g1811 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 330 IPR017930 -
Tpr4g1811 415 SUPERFAMILY Homeodomain-like 271 331 IPR009057 -
Tpr4g1811 415 MobiDBLite consensus disorder prediction 236 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1811 Tpr-Chr4 18817614 18820511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1811 7 363 G2-like Transcription Factor Family AT2G03500 40.000 1.52e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr4g1811 Myb_DNA-binding 6.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1811 - - mtr:MTR_4g086835 629.787