Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1793 ATGCATTTCCCTTTCATTAATCTTCTAGCACAAGCAAGAACTTGGTTCTCCTTTTTATTAATCTCTTTGGTTTTCATCAATGGCTACAAAGCTGAGGTTATGAGTGGAGACACCAAAGTTATACCTATAGGTGCAATAATTGATATTAATTCTAGAGTTGGGAAAGAACAAAGAGTAGCCATGGATATTGCTGCTCAAAATTACAATGATATTTCAAATACCTCCAAGCTTGCTCTCTATTTTCAGGAACCAACAAAGGATTCCTTCAAAGCCACTTCTCTTGCTGAAGAGATGATCAAAAAGCAGAAAGTGGAAGTGATTGTAGGAATGCAAACATGGACAGAAGCAGCTTCGGTGGCTGAATTAGTACATGAAACTCAAGTTGAAGTTCCGATTATATCGTTTGTAGCACCTGCAATTACTCCACCATTGATGGAGATTCGATGGCCGTCTTTAGTGAGACTCGCTAACAATGGAACAGCATATGTAAAATGCATTGCTGATTTGGTTCATGTTTACAATTGGCATAGTGTAATAGCCATCTATGAAGATGATGCCTATGGTGGTGATTCTGGGATGCTAGCACTTCTATCCGAGGCTCTCCAAGATGTTGGTTCGATGGTTGAATATCATTTAGCTTTGCCGTCATTAGCATATCTGCCTAATCCAGGAGAGTTTATTCGTAAAGAGCTGTTTAAGATAACAGAAAACACACAATCTCGAGTATTCATTGTATTGCAATCATCATTAGAATTGGGGATTCATTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATAGAGATTCGGTTTGGATGATCCCCGAGAGCATAACTAATTTGTTGGATTCTGTCAATAAGTCAAGTATTTCTTATATGGAGGGAGCTTTAGGAATCAAAACCTACTACTCAGAAAACAGCAATGAGTATACAAAATTTGAGGATCAGTTCAGAAGAGCTTTTCGCGACAAGAATCCCGAGGAAGATAACCGCGACCCAGGATTTTACTCTTTGCAAGCATATGATAGCATTCAAATAATTGGAAATGCAATAGACAGGATAGCTAGTGACAAAAAGACTTTACTACAGGAAATAGTGTCCAGCAATTTTCTTGGTTTAAGTGGAAAAATTAAATTTGAATCAAAACAGCTTTTGCAGAATCCTACCTTGAGGATTGTAAATGTAGATGGGAAGAGTTACAGAGAATTAGACTTATGGACTCTTGAAAATGGATTCTTCACTAACATCTCCACAAAAGAAGCTAAAAATGGTGCTTCTAGGAACTCAGAAAGTTTAAGTGGTCCAGTAATTTGGCCAGGAAAGTTGCTTAGAGTTCCAAAGGGATGGAACCTACCAACTAAACAAAAACCATTGAGAATTGCAGTCCCTGGAAGAACTGCATTTTCCAAATTTGTCAAGGTTGATTATGATGCTCAAGGAAATCCAAAATATAGTGGATTTTGCATTGATATTTTTGACAAGGTGTTGGAAATTTTGGGGTATGATCTTCCTTATGAATATTGTCCCGTCAATGGAACATATCCTGATCTGGTTCAACTTGTTTATAACAAGACTTATGACGGTGTTGTTGGCGACATGACCGTACTGGCAGAGAGAATGGAATTTGTAGATTTTACCGTGCCATATGCAGAATCAGGATTGTCCATGATAGTTACTGAAAAGTCCCTAGAATCAGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCGGTAACCGGGGCCATCTTGACTTATACAATGTTAGTAGTGTGGTACCTGGAGAAGGAAGACAATGAAGAGTTTCAAGGCAATTGGAAAAACCAAATCACCACTTCTTTTTGGTTTACTTTCTCCTCACTATTCTTTGCTCATAGGGAGAAAATGCATAGCAATTTATCTCGCATAGTGATGGTATCGTGGCTGTTTCTAGTTTTGATTCTTAATTCAAGCTACACTGCGAGTCTTTCTTCAATGCTCACAGTTCAACAGCTGCATGCAAATGTCACCGACATTGAGTGGCTGAAGAAGAACGACATGAAAATTGGTTGTGATGGAGATTCGTTTGTTAGGACATACCTAGAGGAAGTAGAAAAATTCAAACCAGGGAACATTGTCAACATTAGTAATGAAAACAATTATGACCCTGAATTCAAAAATTACTCGATTGCTGCAGCTTTTCTCGAACTCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACACTGCTTCTACACCTACCACCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCCTTGGCCAGAGATGTTTCTAAAGCTATTTTGGAGCTCTTACAAAAGGGAGAATTGAAGAAATTAGAAGATATATGGTTGAATCCCAAAGATGTGTGCTCCAACAATTTGAATTCCAATACTACAGAAAGTTTGAAGCTGGGAAGTTTCTGGATTCTCTATGTGATTTCTGGTGCCACATCTACTATTTGTTTTCTAGTCTCTACTATCCATTCCCTAAAATCTAGTCAAACACTAAATGATGATGCACAAGAAAGTAATGGCTCCCCAAATGATGTGAGCAGATGGAAAAGGGTGGTTAAATTAACTAGGAAGATTTGTAGCAGAAAGCATAAAACAAGCAAAGTAAAGGAAGATGTTACTGATTCTTCCTCCAGTTGTGATTGCATGAGTACTCCTGAGCATCAGCAGGAAATGGCTCTTCAATTACCAGAAATCATAACAGTCTCTTCCCCACCAACACAGTTGTAA 2766 0.3854 MHFPFINLLAQARTWFSFLLISLVFINGYKAEVMSGDTKVIPIGAIIDINSRVGKEQRVAMDIAAQNYNDISNTSKLALYFQEPTKDSFKATSLAEEMIKKQKVEVIVGMQTWTEAASVAELVHETQVEVPIISFVAPAITPPLMEIRWPSLVRLANNGTAYVKCIADLVHVYNWHSVIAIYEDDAYGGDSGMLALLSEALQDVGSMVEYHLALPSLAYLPNPGEFIRKELFKITENTQSRVFIVLQSSLELGIHLFKEASQMGLVDRDSVWMIPESITNLLDSVNKSSISYMEGALGIKTYYSENSNEYTKFEDQFRRAFRDKNPEEDNRDPGFYSLQAYDSIQIIGNAIDRIASDKKTLLQEIVSSNFLGLSGKIKFESKQLLQNPTLRIVNVDGKSYRELDLWTLENGFFTNISTKEAKNGASRNSESLSGPVIWPGKLLRVPKGWNLPTKQKPLRIAVPGRTAFSKFVKVDYDAQGNPKYSGFCIDIFDKVLEILGYDLPYEYCPVNGTYPDLVQLVYNKTYDGVVGDMTVLAERMEFVDFTVPYAESGLSMIVTEKSLESAWMFMKPFTWQMWAVTGAILTYTMLVVWYLEKEDNEEFQGNWKNQITTSFWFTFSSLFFAHREKMHSNLSRIVMVSWLFLVLILNSSYTASLSSMLTVQQLHANVTDIEWLKKNDMKIGCDGDSFVRTYLEEVEKFKPGNIVNISNENNYDPEFKNYSIAAAFLELPYEKVYISKYCKGYTASTPTTRFGGLGFMFQKGSPLARDVSKAILELLQKGELKKLEDIWLNPKDVCSNNLNSNTTESLKLGSFWILYVISGATSTICFLVSTIHSLKSSQTLNDDAQESNGSPNDVSRWKRVVKLTRKICSRKHKTSKVKEDVTDSSSSCDCMSTPEHQQEMALQLPEIITVSSPPTQL* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1793 921 CDD GluR_Plant 456 792 - -
Tpr4g1793 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 902 - -
Tpr4g1793 921 Gene3D - 566 699 - -
Tpr4g1793 921 SUPERFAMILY Periplasmic binding protein-like I 39 449 IPR028082 -
Tpr4g1793 921 PIRSF IGluLR_plant 10 913 IPR017103 -
Tpr4g1793 921 CDD PBP1_GABAb_receptor_plant 43 416 IPR044440 -
Tpr4g1793 921 Pfam Receptor family ligand binding region 60 397 IPR001828 -
Tpr4g1793 921 Gene3D - 164 331 - -
Tpr4g1793 921 PANTHER GLUTAMATE RECEPTOR 3.4 21 902 - -
Tpr4g1793 921 SUPERFAMILY Periplasmic binding protein-like II 436 793 - -
Tpr4g1793 921 Gene3D - 338 457 - -
Tpr4g1793 921 Pfam Bacterial extracellular solute-binding proteins, family 3 481 793 IPR001638 -
Tpr4g1793 921 Gene3D - 458 565 - -
Tpr4g1793 921 Pfam Ligand-gated ion channel 794 823 IPR001320 GO:0015276|GO:0016020
Tpr4g1793 921 SMART GluR_14 457 794 IPR001320 GO:0015276|GO:0016020
Tpr4g1793 921 Gene3D - 700 796 - -
Tpr4g1793 921 Gene3D - 36 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1793 Tpr-Chr4 18654137 18658116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1793 17 851 Ion Channels AT2G29120 33.601 1.09e-143 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1793 - - aprc:113859865 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1793 4 18654137 18658116 Tpr4g1793 4 18654137 18658116 ECH