Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1788 ATGGAGACTCCGAGCAAGAAAAACAAAAGAACTGAAGACAAAGAGGGTGAAACCAACAGAGGTGATTCATATATGTCTGAAAGCAATGCAGTTGATGATCTTCCTTTGGCCAAAAGTAATTACAATCAACATTTGGTCGAAAGCAATAAAAGTGAAGATGGCAAGCAGGGCAAGAAGAAAAATAAAAAGAAGAAACCGAGTGAAGAAAGCAAAGATAAGGAGTATAAGGAGTTGAAAAGCAACGAATGTGAAGATCATAACCAAGGAAAGCAGATAAAAAAGAAGCAAATGCTAATTGAAGGAAACACACCGAAGGAGTGTAATGACTTTAGGAGCAATGTAGATGAAGATGGCAAGCAATACAAAAAGGTGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGAAAACATAAGGAGTTCGAAAGCAATGGATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAAAAGCATAAGCTAATTGAAGGAAACACACTGAAGGAGTGTAATGAATTTGGAAGCAATGGAGGTGAAGACGGTGAGCAAGACAAGAAGATGAAGAAAAATAAAAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGCGTAATGAGTTCAAAAGCAATGAATGTGAAGACGACGAAGGGAAGAAGATGAAAAAGAAGCGGAAACTAATGGAAGGAAACACACTTAATGAGTCTAATGACTCTAGAAGCAATGAATGTGAAGATGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTCTAGCAAGTTTAAAAACAATGATGGGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTTACACCTGAAGAAGATGAGACACTCAAAGCATCTGTTTTTGCCTATATAGATTCTCATGGTCTGGGTGAAGAAGGTCTTGATAAGGTTCTTCATGCCGCATCACACAGTGAGGTTAGAGGCTGTTGGAAAGAAATTGCACGAGCCCTACCTCATAGGCCACACTATAGTGTGTATAAACGTGCTCATGCTTTGTTGGAAAATGTTGGGAGATGTAAGTGGACACCTGATGAGCTTGAATTTATACGGAAGTCCTATGAGCAACATGGACCTGATTGGAGGCTAATAGCTGATGCTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGTATGGCGTAGATTAAAATATGAGAAAGCAAGATTTGGACATTGGTCACAAGAGGAGTATCAAACTTTATTTAATTTAGTAAACATGGATCTGCGCACAAGGTCTTTAGAGCCTTATAGAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATATTGCTGCAAGAAGTGGTATGAGGAGTTAACATCAATAATGGTTACTCGTGGTGAATGGTGTGATACTGACGATTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGAGTGGGACGAGCTACTTGAGCATAGGTCTGGTGATGCATGCAGAAAACGATGGGATCAAATGGTTCAACATCTTGGGGAGCATGCAAGGAAGCCATTTATGGAGCAGGTTGAAGTTCTGACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAAACCTTTGACAACAAACCTGTGATTTGTTGA 1731 0.3905 METPSKKNKRTEDKEGETNRGDSYMSESNAVDDLPLAKSNYNQHLVESNKSEDGKQGKKKNKKKKPSEESKDKEYKELKSNECEDHNQGKQIKKKQMLIEGNTPKECNDFRSNVDEDGKQYKKVKKKKKKLSEERKHKEFESNGCEDDNQGKKMKKKHKLIEGNTLKECNEFGSNGGEDGEQDKKMKKNKKKLSEESKHKERNEFKSNECEDDEGKKMKKKRKLMEGNTLNESNDSRSNECEDGEQDKKMKKKKLSEESKHKESSKFKNNDGKPKRVTFSDEVETFCCDGLVRGKRFTPEEDETLKASVFAYIDSHGLGEEGLDKVLHAASHSEVRGCWKEIARALPHRPHYSVYKRAHALLENVGRCKWTPDELEFIRKSYEQHGPDWRLIADALGKSRDQVKDVWRRLKYEKARFGHWSQEEYQTLFNLVNMDLRTRSLEPYRKSQHGMLRDNICWEAIGHKLETRNSAYCCKKWYEELTSIMVTRGEWCDTDDFRLIDALYTLDACCMEEVEWDELLEHRSGDACRKRWDQMVQHLGEHARKPFMEQVEVLTKRFCPDLLEARETFDNKPVIC* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1788 576 ProSiteProfiles Myb-like domain profile. 362 411 IPR001005 -
Tpr4g1788 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 362 415 IPR017930 -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 177 228 - -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 33 47 - -
Tpr4g1788 576 CDD SANT 369 411 IPR001005 -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 63 93 - -
Tpr4g1788 576 Gene3D - 411 485 - -
Tpr4g1788 576 Coils Coil 114 141 - -
Tpr4g1788 576 SMART sant 416 483 IPR001005 -
Tpr4g1788 576 SMART sant 487 538 IPR001005 -
Tpr4g1788 576 SMART sant 293 364 IPR001005 -
Tpr4g1788 576 SMART sant 366 413 IPR001005 -
Tpr4g1788 576 ProSiteProfiles Myb-like domain profile. 412 481 IPR001005 -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 1 274 - -
Tpr4g1788 576 ProSiteProfiles Myb-like domain profile. 483 536 IPR001005 -
Tpr4g1788 576 SUPERFAMILY Homeodomain-like 368 428 IPR009057 -
Tpr4g1788 576 PANTHER GB|AAC33480.1 13 575 - -
Tpr4g1788 576 Pfam Myb-like DNA-binding domain 370 428 - -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 134 165 - -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g1788 576 Gene3D - 371 410 - -
Tpr4g1788 576 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1788 Tpr-Chr4 18614288 18617551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1788 339 545 MYB-Related Transcription Factor Family AT3G18100 23.963 8.24e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g1788 Myb_DNA-bind_6 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1788 - - cam:101514362 644.425