Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1759 ATGTTAGATCTTAATCTAAACGATGAGAACTCGACCGATTCGACTCAGAACATTAACTCACCAATGATTTCGGAGAATTTTCCCCAAACTTCATGGAATCAAATGGTGGAATCAGGAACATCGAATTCTTCAATATTCAATGCGGACGGTTCAAGCAACAACGCAAACGATGAGGACTCGTGTTCCACGCGCGTTGATGACGTTTTCACTTTCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTTCCTGTGAATGGAGGAGGTGATGATGATGAAGGTTGGTGTAATAATTGGAAGTTGCAAGCTACGTCATCGTTTCCTGTGAAGAATGGTTCAGTTGATCTATCGTTTAATCAGAATGAAGAGATGAAGATTGTTCAGCCTCAACAACAAGCTAAGAAGAGTAGAAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGAACTGGAAGATGGGAATCACATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCAATTAAGTTCAGAGGAGTTGGTGCTGACATAAATTTCAATCTGAATGATTATGAGGATGATCTTAAACAGACGAAGAATTTATCCAAAGAGGAATTTGTGCACATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGGAGTTCAAAATACCGCGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTATCATTAACAATGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGCACATACCAAGGAGAGATGAAATCTGCAGCCAACAATGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGACCTGGTCCCAAGGAAAATTCAGGGAAATTTCACTCCCCTTCTGTCCCTTACACAAGTTCAAGGATGGAAACCAATGTTTTAGGAACCGGTAATCCATCTTTGAAAAGGCTATTAGTAACTGAAGAGCATCATTCTCTATCGAATGGCATGTATCCCGCTTTCTTTCCCAATGAGGGAAGAGCAGATAGTATCGGCAAAGATCCTTCCAAAGGACACCCCAATTGGGCGTGGCAACCTCATGGCCAGATCACTGCTATCCCAATGCCACCAGCCTCTGCAGCAGCAGCATCATCAGGATTCTCAATTTCGTCTCCATTTCCATCATTGACTCCCACATTTCCACCAAGATCTATGAATACAATTCCTCATAGTCTCTATTTTACTTTGCCCAATGTACCCAACAGCAACGCGTCTCAATATTATTATCAGGTTAAGCCCCCGCAGGCACCACCCTAG 1410 0.4326 MLDLNLNDENSTDSTQNINSPMISENFPQTSWNQMVESGTSNSSIFNADGSSNNANDEDSCSTRVDDVFTFSFDILKMEGSNDVVTKEFFPVNGGGDDDEGWCNNWKLQATSSFPVKNGSVDLSFNQNEEMKIVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIINNGREAVTNFEPSTYQGEMKSAANNEGGSQNLDLNLGIATPGPGPKENSGKFHSPSVPYTSSRMETNVLGTGNPSLKRLLVTEEHHSLSNGMYPAFFPNEGRADSIGKDPSKGHPNWAWQPHGQITAIPMPPASAAAASSGFSISSPFPSLTPTFPPRSMNTIPHSLYFTLPNVPNSNASQYYYQVKPPQAPP* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1759 469 MobiDBLite consensus disorder prediction 1 25 - -
Tpr4g1759 469 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700|GO:0006355
Tpr4g1759 469 CDD AP2 244 289 IPR001471 GO:0003700|GO:0006355
Tpr4g1759 469 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 430 - -
Tpr4g1759 469 SMART rav1_2 153 215 IPR001471 GO:0003700|GO:0006355
Tpr4g1759 469 SMART rav1_2 245 293 IPR001471 GO:0003700|GO:0006355
Tpr4g1759 469 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700|GO:0006355
Tpr4g1759 469 SUPERFAMILY DNA-binding domain 244 288 IPR016177 GO:0003677
Tpr4g1759 469 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Tpr4g1759 469 Pfam AP2 domain 153 201 IPR001471 GO:0003700|GO:0006355
Tpr4g1759 469 MobiDBLite consensus disorder prediction 133 154 - -
Tpr4g1759 469 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1759 Tpr-Chr4 18181485 18185624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1759 1 425 AP2-EREBP Transcription Factor Family AT5G60120 45.279 3.19e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g1759 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1759 K09284 - gmx:100788303 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1759 4 18181485 18185624 Tpr4g1759 4 18181485 18185624 ECH
Tpr7g4343 7 52180776 52185331 Tpr4g1759 4 18181485 18185624 PCT