Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1753 ATGGATCATTTCACAGATAAATTACCGCAAATGGATCTCATGCGTTCCGAGAAGATGACATTCGTTCAACTCATCATTCCCGCCGAGTCCGCTCACTGTTGCATTACCTATTTAGGCCAACTCGGTCTTCTTCAATTTCGCGACTTAAATTCTGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGGTTCCTCATGGATCAGATCAATAAAGCTGGGATAAAGTCTTCCCTTTCTGTCTTGCAATCAGATACACACTTGGAGGATATAGAGACACAACTTTCTGAGCATGAACACGAGATAATTGAAATGAACTCTAACAGTGAGAAACTTCAGCAATCATATAACGAACTCCTTGAGTTCAAGATTGTACTGCAAAAGGCATGTGGTTTTCTAGTTTCAAGTCATGGCCAGATCGTTTCAGAGGAGAGAGAACTGGAGGAGAATGCCTACTCAAATGGAGACTTTGTTGAGACACCATTTTTGTTTGAACAGGAAATTGTGCCTGGCCCATCAAAATCAAACCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTCAGGTTTGAAAGGATGTTGTTTCGTGCCACAAGAGGCAATATGCTTTTCAATCAGGCACCAACTGATGAACAAATTATGGATCCTATTTCAGCCGAGATGGTTGAGAAGACTGTGTTTGTTGTGTTTTTCTCTGGAGAGCAAGCAAGAAGAAAGATTCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATAAGTAAACAAACGCAAATAACTCAGGAGGTTTCATCACGCCTTTCTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTATCTTCTGTAGGAGGTCATTTAGCAAAATGGATGGACATGGTAAGAAGAGAGAAGGCTGTATATGATACGCTGAACATGTTAAATTTTGATGTCACCAAAAAATGTCTTGTTGCAGAGGGTTGGTGTCCAATATTTGCAACAACACAGATTCAGGATGCACTGCAACGTGCAACTTTTGACAGCAATTCTCAAGTGGGGGTAATCTTTCATTCATTGGATGCACTGGAATCGCCACCAACATATTTTAGGACCAACAATTTCACAAATCCATATCAAGAAATTGTAGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCAGCAGTTTACACAACTATTATATTCCCGTTTCTTTTTGCGGTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGCTGCTTGGAGCATTGGTTCTTATAGCACATGAAAGAAAGCTCAGCAATCAGCGACTGGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGATTCTTTTGATGTCACTATTTTCAATGTATTGTGGGTTAATCTACAATGAATTCTTCTCAGTTCCTTTTCACATATTTGGTGCGTCTGCTTACAAATGCCGAGATATGTCATGCAGGGATGCACATACTACTGGCTTAGTAAAATATAGAGAACCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCCTTTCTGAATTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCATATGAACTTAGGAATTATGTTAAGTTACTTCAATGCTCGTTTCTTTGGCAGTTCTCTGGATATAAGGTATCAGTTTGTGCCGCAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATATAATGATTTACATGTTTTTAAGCCCCTTTGACATGCTTGGTGAGAATGAGTTGTTCTGGGGCCAAAGGCCACTTCAAATTTTGTTATTGCTTCTGGCTCTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTATATTAAAGAAACTTCATAATGAGAGATTTGAAGGACGCAATTACGGTGTTCTTAATACCTCTGAGATAGATCTTGAGGTGGAACCGGATTCTGCCAGGGCCATGCAACATCATGATGACTTTAATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTGGGTTCTGTTTCAAATACGGCATCATATCTCCGACTTTGGGCATTAAGCTTGGCTCACTCAGAGCTTTCAACTGTTTTTTATGAGAAAGTCCTGCTACTAGCATGGGGGTATGACAATCTTCTCATTCGGTTAGTGGGGCTAGTTGTTTTTGCATTTGCAACTGCTTTTATACTACTTATGATGGAGACTCTGAGCGCTTTTCTTCACGCCCTGCGACTTCATTGGGTTGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAATTCAGACCTTTTTCCTTCGCCACCCTAGCAGATGATGAAAATTGA 2469 0.4054 MDHFTDKLPQMDLMRSEKMTFVQLIIPAESAHCCITYLGQLGLLQFRDLNSEKSPFQRTFVNQVKRCAEMSRKLRFLMDQINKAGIKSSLSVLQSDTHLEDIETQLSEHEHEIIEMNSNSEKLQQSYNELLEFKIVLQKACGFLVSSHGQIVSEERELEENAYSNGDFVETPFLFEQEIVPGPSKSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPTDEQIMDPISAEMVEKTVFVVFFSGEQARRKILKICEAFGANCYPVPEDISKQTQITQEVSSRLSDLEATLDAGIRHRNKALSSVGGHLAKWMDMVRREKAVYDTLNMLNFDVTKKCLVAEGWCPIFATTQIQDALQRATFDSNSQVGVIFHSLDALESPPTYFRTNNFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIAHERKLSNQRLGSFMEMLFGGRYVILLMSLFSMYCGLIYNEFFSVPFHIFGASAYKCRDMSCRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGIMLSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHIMIYMFLSPFDMLGENELFWGQRPLQILLLLLALIAVPWMLFPKPFILKKLHNERFEGRNYGVLNTSEIDLEVEPDSARAMQHHDDFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLLIRLVGLVVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFATLADDEN* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1753 822 PIRSF ATP6V0A1 9 822 IPR026028 GO:0000220|GO:0046961
Tpr4g1753 822 Coils Coil 99 126 - -
Tpr4g1753 822 Pfam V-type ATPase 116kDa subunit family 37 814 IPR002490 GO:0033179|GO:0046961|GO:1902600
Tpr4g1753 822 PANTHER VACUOLAR PROTON ATPASE A1 6 821 - -
Tpr4g1753 822 PANTHER VACUOLAR PROTON ATPASES 6 821 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1753 Tpr-Chr4 18081881 18092421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1753 1 817 Primary Pumps ATPases(2) AT2G28520 78.877 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1753 K02154 - gmx:100800799 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1753 4 18081881 18092421 Tpr4g1753 4 18081881 18092421 ECH
Tpr7g4347 7 52217949 52228804 Tpr4g1753 4 18081881 18092421 PCT