Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1750 ATGAAGCGTGCAAGAACTACAGAAGATTCTACCTTTTCTAGGGTTTCACCATCTCTTGAAGCTGGAATCATCAAGAAGCTTCGGTTAGAGAATTTTATGTGCCATTCAAACCACGAAACTGTATTTGGAAACCACGTTAATCTCATCACTGGTCAAAATGGAAGTGGTAAAAGTGCAATACTTACTGCATTATGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATTAAAACTGGTTCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGCGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATTATATTGAAAGATTGCCAAGGAAGGAAAGTTTTCAATCGGAAAGCAGATCTACTAGAAATCATTGAACATTTCAATATTGATGTGGAGAACCCGTGTGTGATTATGAGTCAAGACAAAAGCCGAGAATTTCTGCATTCCGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCTGCTGAAATAACCTCTGCACGTTCAATAGTTGAAGATTTAGGGTCTGCAATAAGACCTATAGAGAAAGAACTCATTGAGCTGCAAGTTAAAATTAAAACGATGGAACATATTGAACAAATTTCTGTAGAGGTTCAGCAATTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTCGAGGATCAAAATGTAAGGATTCAAAAGCTGAAGGATCGGGTTCCTTTATGCCAAGCTAGGATTGATAAACAACTGCATCTGCTTGATAAATTAAGTGAAAGCTGCTCTAAGAAGAAAGCTGAAATTGAAAGTATGATGTCATCCCAAGTTAAACAAATGAAGGAAAATTTGAGCCACTCTATGTCCTTGGCAAAAAAAGAAGCATTTGCACTTCAGCAAGACAGCAAATGCAAAGCTAGTAAAATACAGAAGATGGTACAACAGCTCAAAACGCTTGAACTACAAGTGCAGGATATTCATGAGCAGCATGTGAAAAATACCCAGGCCGAAGAATCTGACAGGGAAGAAAAACTGAAGGGGCTTAAAGACGAGGTTAAAGCTGCTGAATCAGAATTGGAAAGATTGAAAGAAGCAGAGGCTACATTAATGAACGACATTAATAGGCAAAATGACGACATCCGAAGCATTGCTAATAAGATCCAAGATCATGAAAAGAAGTATAGTGATATCATCTATAATCTTCGTGGTCTTCAACAACAACAAAGCAACAAGATCACAGCATTTGGAGGAAATAAAGTGTTGAGTTTGTTAGAAAAAATTGAGAGATGTCATCGAAGGTTTAAGATGCCTCCCATTGGTCCAATTGGCGCCCATCTGAAGTTGCTTAATGGTGATAAATGGGCGGTTGCTGTTGAATATGCCATTGGGAGATTGCTCAATTCTTTTATAGTGACTGATCACAAGGACTTTCGTCTTCTGAAACAATGTGCGAAGGAAGCAAATTATGGTCATCTTCAAATTATTATTTATAATTTTTCAACCCCAAGGTTGATGATACCAGAGCACATGCTTCCTAATACAAACCATCCATCAACACTTTCCATCTTACAATGCGAGAATCACACTGTGTTTAATGTCCTAGTGGATCAGGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACTGGGAAAGTGGTTGCATTTGAGGAAAGGATCCGAAATCTGAAGGAGGTCTTTACTGTGGATGGATGTAAAATGTTTTCTCGAGGTCCGGTAGAGACAACTCTTCCTCCAAAGAGGAACCAAGTATATGGTCGTCTAAGTAGTTCTGTTGAAGGTGACATTGAGAAACTTCATAATGATGCATCTAATGAACAAAAAGCAGCAAATGACTATAAAAGGGATAAAAGAGGTGCAGAGGTCAAGCTTGAGGATCTTGACAAGAAGATGAGGTCTATAAAGATATTACGTGTTGATGCTGGAAAAAGTTTTTCTTCGAAGAAGCTATTTTTGGAGGATGCAATGCTTCAACAAGCTGCTGAAAGTAGCCTGCCACCTTTGTCCTCAGTTGATGAGATTGGTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGAAGAGCAGGTGTTGTTAGAAGGCCTTGAGAAGAGGAGGCTTGAAGCAGAGAGAAAAGCTAGTGATCTTAAAGTAAAAGTTGACGAATTGTGTGAATCAGCGAACCATGAACATGCTTCCCTTGAGAAAGCTGAGACTGAACTTCTAGAGATTGAGAGACAAATAGATTCAGCGAAGGAGACGAAGGTTCACTACGATAATGTCATGAAAGACAAGGTCCTGCATGATATTAAGGAGGCAGGGAAGCACTATCTAGAGCTTACAAAAAGGCGTGAGGAAAATTTTGAAAAGGCTTCCGTAATTTGCTGTCAGAATGAACTTGCTTCATTAGGAGGTTGTGATGGGATTACCCCAGAGGAAATCAGTGCCGAATTAGAAAGTCTTAATCGCACACTTAGACGTGAGAGCCTAAGATACTCTGAATCAATTGATGATCTACGGATGTTATATGAGAAAAAACAACGGAAGATTATAAAAAGGCAGCAAGTTTATAAAGCCCTTTGTCAGAAACTAGATGCTTGCCAGAATGCTTTAGAGTTTCGAAGGAGAAAGTTTCAGACAAATGCAGCCAATCTCAAGCAGCAACTGTCTTGGAAATTTAATGGCCATTTGAGGAAAAAGGGGATCAGTGGACTTATCAAAGTTGATTATGAAAATATGGCCTTATCGGTTGAGGTACAGATGCCCCAAGATACATCAAACAGAGCTGTTCGGGACACAAGGGGGCTTTCAGGTGGGGAGCGCTCCTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATTAGCATGGACACTCTGATTGATTATGCTGCGGCACAAGGATCCCAGTGGATATTGATCACCCCGCACGATACTAGCTTGGTTAAGGGAGGAGGCAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3931 MKRARTTEDSTFSRVSPSLEAGIIKKLRLENFMCHSNHETVFGNHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGSSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTSSIILKDCQGRKVFNRKADLLEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISAEITSARSIVEDLGSAIRPIEKELIELQVKIKTMEHIEQISVEVQQLKKKLAWSWVYDVDKKLEDQNVRIQKLKDRVPLCQARIDKQLHLLDKLSESCSKKKAEIESMMSSQVKQMKENLSHSMSLAKKEAFALQQDSKCKASKIQKMVQQLKTLELQVQDIHEQHVKNTQAEESDREEKLKGLKDEVKAAESELERLKEAEATLMNDINRQNDDIRSIANKIQDHEKKYSDIIYNLRGLQQQQSNKITAFGGNKVLSLLEKIERCHRRFKMPPIGPIGAHLKLLNGDKWAVAVEYAIGRLLNSFIVTDHKDFRLLKQCAKEANYGHLQIIIYNFSTPRLMIPEHMLPNTNHPSTLSILQCENHTVFNVLVDQGNVERQVLVNDYNTGKVVAFEERIRNLKEVFTVDGCKMFSRGPVETTLPPKRNQVYGRLSSSVEGDIEKLHNDASNEQKAANDYKRDKRGAEVKLEDLDKKMRSIKILRVDAGKSFSSKKLFLEDAMLQQAAESSLPPLSSVDEIGEEISEINKKIKEEQVLLEGLEKRRLEAERKASDLKVKVDELCESANHEHASLEKAETELLEIERQIDSAKETKVHYDNVMKDKVLHDIKEAGKHYLELTKRREENFEKASVICCQNELASLGGCDGITPEEISAELESLNRTLRRESLRYSESIDDLRMLYEKKQRKIIKRQQVYKALCQKLDACQNALEFRRRKFQTNAANLKQQLSWKFNGHLRKKGISGLIKVDYENMALSVEVQMPQDTSNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLIDYAAAQGSQWILITPHDTSLVKGGGRVKKMQMAAPRS* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1750 1058 Pfam RecF/RecN/SMC N terminal domain 24 1040 IPR003395 -
Tpr4g1750 1058 Coils Coil 723 757 - -
Tpr4g1750 1058 CDD ABC_SMC6_euk 24 178 - -
Tpr4g1750 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 20 1058 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tpr4g1750 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 20 1058 - -
Tpr4g1750 1058 Coils Coil 346 366 - -
Tpr4g1750 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1048 IPR027417 -
Tpr4g1750 1058 CDD ABC_SMC6_euk 959 1058 - -
Tpr4g1750 1058 Gene3D - 746 1053 IPR027417 -
Tpr4g1750 1058 Gene3D - 23 221 IPR027417 -
Tpr4g1750 1058 SUPERFAMILY Smc hinge domain 430 609 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr4g1750 1058 Coils Coil 765 792 - -
Tpr4g1750 1058 Coils Coil 368 430 - -
Tpr4g1750 1058 Coils Coil 641 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1750 Tpr-Chr4 18041797 18061019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1750 21 1058 Structural Maintenance of Chromosomes family AT5G61460 55.962 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1750 K22804 - gmx:100816916 1505.73