Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1739 ATGGAGAGTATTATTAGTGACACTTCTTCTCCAACTTCTTCATCTAATTCACTACAATTAATAGCTCAAGTTCCTTCTCAAGTTGTTGTTATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTAGTGCTGAAAAATGTGTTTTGGCACCTTATTTTCCTCCTAATGATCCTGCTAAGTTTACCATTGCTCATAGAGTTTTTGGTGCTAGCAATATCATCAAATTCTTACAGGAACTTCCAGAAGCTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAAGTGCAAGAGTAAGAGACCCAGTTTATGGTTGTGCAGGAGCAATTTGTCAACTCCAAAAACAAGTCAATGAACTTCAAGCACAATTAGCCAAATCACAAGCTGAAGTTGTAAACATGCAACTCCAACAAGCCAATCTTGTTGCTCTAATTTGCATGGAAATGTCACAAAGCCCACAAGAATCACCACAACAAATATCATTGGATGATAATAATTTTATTCAAAGTCCTAACCATAATAGTGGCCATCAAATTAGTTTGAACTTCTTTGATGAGAACACTAGTCTAAACTCATTGTGGGAGCCACTTTGGACATGA 609 0.3727 MESIISDTSSPTSSSNSLQLIAQVPSQVVVMSPCAACKILRRRCSAEKCVLAPYFPPNDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQLAKSQAEVVNMQLQQANLVALICMEMSQSPQESPQQISLDDNNFIQSPNHNSGHQISLNFFDENTSLNSLWEPLWT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1739 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 199 - -
Tpr4g1739 202 Coils Coil 113 140 - -
Tpr4g1739 202 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
Tpr4g1739 202 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
Tpr4g1739 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 14 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1739 Tpr-Chr4 17942504 17945740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1739 29 202 AS2 family AT1G07900 63.277 1.03e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g1739 LOB 9.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1739 - - gmx:100797804 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1739 4 17942504 17945740 Tpr4g1739 4 17942504 17945740 ECH
Tpr7g4351 7 52292940 52295922 Tpr4g1739 4 17942504 17945740 PCT