Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1736 ATGGACTCAACCGAAGACTTACACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGCGGCGGAATCCATGGAATCCGATCTCGACTTTGCTTACCGTCTCCAATTACAGGAAGCCTTAGCCGCTTCTCTCACCAACCATCCTTCTTCCTCCTCCACAGACGTTATTTTCGAAGAACCGATCATCGACGACGACGACGCCGTTTTCAACGCAACGTCTCTCCAATTGGAAGAGCTTGAAAAGATGGAAACGGAAATGCACGACAGGGAGCAGAGCGAGAGAGTAATGCGTGAGGCGAAGGATGATCTCCGCCGTCGAATTCATGATCAGAAAATGGCGTCGGAGATTCTCAATTTTCCTGAGGAGGATTGGGAGGAATGGGGGGATAAATTCGAGAAACCTTTCGGGGAAGGTTGTTCGGGGGAAGGTTGTTCGAAAAGTTCGAAAAGTGGTAGAAGTGATGAAGGTGCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAAGAAAGTGTGAGAGATGAGAATTTTTCTGTGGCTGGGATTGGTGTTGCTGTTTGTGATTTGAATGATAATTTGATATTTGAAGTTTCTAAAGCTGTTGTTGGGAATGGAACAAATAAAGTTGCTGTGGAACTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTCTTGCTTTGGATTTGAAAAATGTTATTTGTTTTGGTGATCATTATCCACTTTTTCAATTTTTAAGTGGAAAATGGCCTGCAAAACAGAGGAAGATTGCTATGTTACTTAATCAGGTGAATCTGCTTCAAAGAAAATTTGCATACTGCAGTCCAAGGCTAGTGGCGAGACAGGATCTGAAATTTGCATTGAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACGAGGCCTGCTGAGTCTAGCAGCGCAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACCGATCATAGTCAATTTTTTTCAGTTGATGGTTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGCCCTCATGAGGGATGCAAGAATGAGCTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACTATGCAGCAACGAAAAGTGGAAGCTTCAATTCCGCATACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAAGTTTTAAACTACTCCAAAAGTCTTATGGGCTCCGAACATTCGTTACCCAAGAAATGCGTAAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAATTTCTGGCATCAAGGAGTCTTTGGAAGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGAAGAGAACAATATTTGGTTAGAAGATCGCCATGCTGAGTCAGAGGAAGATGAGGAAGAAGATGATGATGATTTTTATTATTAA 1659 0.4213 MDSTEDLHFLLTAQRHELTAAESMESDLDFAYRLQLQEALAASLTNHPSSSSTDVIFEEPIIDDDDAVFNATSLQLEELEKMETEMHDREQSERVMREAKDDLRRRIHDQKMASEILNFPEEDWEEWGDKFEKPFGEGCSGEGCSKSSKSGRSDEGAVVRVYFKGLVSEESVRDENFSVAGIGVAVCDLNDNLIFEVSKAVVGNGTNKVAVELKALIEAFNAVLALDLKNVICFGDHYPLFQFLSGKWPAKQRKIAMLLNQVNLLQRKFAYCSPRLVARQDLKFALKLAKDAIVSQSTRPAESSSAKSLKETCVICLEDTDHSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRKVEASIPHTEKIYCPYPRCSALMSKSEVLNYSKSLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKFLASRSLWKQCVKCNHMIELAEGCYHMTCRCGYEFCYKCGAEWKDKKATCSCPLWEENNIWLEDRHAESEEDEEEDDDDFYY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1736 552 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 533 IPR031127 GO:0004842|GO:0016567
Tpr4g1736 552 SMART ibrneu5 380 452 IPR002867 -
Tpr4g1736 552 SMART ibrneu5 465 522 IPR002867 -
Tpr4g1736 552 Gene3D - 450 552 - -
Tpr4g1736 552 SUPERFAMILY RING/U-box 394 457 - -
Tpr4g1736 552 Pfam Reverse transcriptase-like 178 292 IPR002156 GO:0003676|GO:0004523
Tpr4g1736 552 ProSiteProfiles TRIAD supradomain profile. 309 532 IPR044066 -
Tpr4g1736 552 SUPERFAMILY RING/U-box 466 529 - -
Tpr4g1736 552 ProSiteProfiles Zinc finger RING-type profile. 313 357 IPR001841 -
Tpr4g1736 552 ProSitePatterns Zinc finger RING-type signature. 331 340 IPR017907 -
Tpr4g1736 552 Gene3D - 159 299 IPR036397 GO:0003676
Tpr4g1736 552 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 533 - -
Tpr4g1736 552 Pfam IBR domain, a half RING-finger domain 383 452 IPR002867 -
Tpr4g1736 552 Pfam IBR domain, a half RING-finger domain 471 520 IPR002867 -
Tpr4g1736 552 SUPERFAMILY RING/U-box 311 392 - -
Tpr4g1736 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 395 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1736 Tpr-Chr4 17898866 17903813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1736 160 511 C3H Transcription Factor Family AT2G19610 36.034 4.21e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1736 - - aprc:113858620 797.734