Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1727 ATGGATTTGGTAGCTGGTGTTAAGGAAAAATTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTGACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTTGTCGATAGGATATTGTCCATTATTTCAGATGAACAAGTATCGAAAATGTGGGCTAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGATGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGCTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTAGAGGAGTCCTTTCAAATTCAATCATCTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATTTGATCAAGTGTGATGATGCAAGATGTCAAGTGTGGCAACACATAAGTTGCGTTATTATTCCGGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGATCCGTTTTGGGTTGCAGTATCTCATCCTTTATTACCTGTAAAGTTGACCACAACCAGTATTCCAACTGACGGTACCAACCCAGTGCAGTGTGTGGAGAGAACATTTCAACTCACAAGAGCAGATAAGGACATGGTATCAAAGCAAGAATTTGATGTTGAGGCTTGGTGTATGCTTTTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTAGCAATCAATAGTCTTCCTGTTCGAACAACTAACAGACCCGGTTCACAATTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGATGGAATTAATAAGATTTCATTAACAGTATGCGATCCTCGGATTTTTTGTTTAGGTGTTCGCATTGTTAGAAGGCGCAGTTTGCAACAGATCCTAAACTTAATTCCGAAGGAGCCTGATGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGATACATTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGACCTTGATGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAACATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAAAGTGAAAATGAACGTTTCGATTTAGGGAATCTTGGACAATGGCACTCTCCTGATGGATCCCTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAAACACTGAAGCAAGTAAAACAGGAAGGTTTTTCAGATGGACCTGCTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAGCCCGAGGACACAAACACCTCTTCTGGTCATAGATTAAAAGAGGTTTTTGGAAATCCTGAACATGTTGTTATTCCAATGAGCAGCAGTGGCACTGGAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATGTTGATTATTCTACTACCAATGGAATTGAGATGGATTCTTTGTCCCTCAATAATGTTGATTTAGCTCGAGGATATACTGCACTTAACACATCTACTCAGGTGGGTGGTGCAGAAGTAATTGTTCTTAGCGACTCTGACGAAGAAAACGATATATTGGTGTCTCCTGCTATTGTAAATAACAGCAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGTAATTGTTGACCCATTTGCCGAAGATCCGAATCTTGGTGGAAATCCATGCTTGGGGCTTTTTCATAATGATGATTTTGGGATGTCTTCTCTGTGGTCGCTGTCTTCTGCATCTCAGGCTGCTCCAGGATTCCAATTGTTTGACTCTGATGCAGATGTATCTGATGCATTGGTCCATTTGCAGCATGGTCCTAGTAATGGTACCTCGCCATTAAATGGTTATGCATTGGCTCCCGAAACTACTTTGGGATCTAGTAGTCTCTTACAAGATTCCTCTGCCGGTCGGTCGGATGCCGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTAATGGAGATGATCCCTCACTTAAGATTTTTCTCCCAACAAGACCAGCTGAGTCATCTATGCAGAATGAATTCAGAGATCAAACAAATCTATCCAATGGTGTCTGCACTGAAGATTGGTTTTCCCTTTCTCTTGGAGGTGGTGCTGGCGGCAGTAACGGCGATGCTTCCACTCAAAATGGATTGGATTCTAGACATCAAATCCCAGCCAGAGACAATGGCACAAATAATTTGGCTGATACTGCTTCTTTGCTTCTTGGTATCAATGATGTGAGATCTGACAAAGCAGCTAAACAAAGGCCAGGTAGTCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCGGAATAA 2640 0.4269 MDLVAGVKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSIISDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQAVSDSSNVKVKAEVEESFQIQSSTKIRCLCGSTLETEDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVAVSHPLLPVKLTTTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAINSLPVRTTNRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDPRIFCLGVRIVRRRSLQQILNLIPKEPDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSENERFDLGNLGQWHSPDGSLCASTDGDIKRVETLKQVKQEGFSDGPAGLKLGIRKNRNGVWEVSKPEDTNTSSGHRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGHVDYSTTNGIEMDSLSLNNVDLARGYTALNTSTQVGGAEVIVLSDSDEENDILVSPAIVNNSNQNDTADGYSMPPPVIVDPFAEDPNLGGNPCLGLFHNDDFGMSSLWSLSSASQAAPGFQLFDSDADVSDALVHLQHGPSNGTSPLNGYALAPETTLGSSSLLQDSSAGRSDADLNGGLVDNPLAFNGDDPSLKIFLPTRPAESSMQNEFRDQTNLSNGVCTEDWFSLSLGGGAGGSNGDASTQNGLDSRHQIPARDNGTNNLADTASLLLGINDVRSDKAAKQRPGSPFTFPRQKRSVRPRLYLSIDSDSE* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1727 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Tpr4g1727 879 Pfam PHD-finger 116 168 IPR019787 -
Tpr4g1727 879 MobiDBLite consensus disorder prediction 845 879 - -
Tpr4g1727 879 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Tpr4g1727 879 ProSitePatterns Zinc finger PHD-type signature. 117 167 IPR019786 -
Tpr4g1727 879 Pfam MIZ/SP-RING zinc finger 361 409 IPR004181 GO:0008270
Tpr4g1727 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 449 IPR013083 -
Tpr4g1727 879 SMART PHD_3 116 168 IPR001965 -
Tpr4g1727 879 CDD PHD_Bye1p_SIZ1_like 116 167 - -
Tpr4g1727 879 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 809 - -
Tpr4g1727 879 SUPERFAMILY SAP domain 1 64 IPR036361 -
Tpr4g1727 879 SMART sap_9 11 45 IPR003034 -
Tpr4g1727 879 Pfam SAP domain 14 42 IPR003034 -
Tpr4g1727 879 ProSiteProfiles Zinc finger SP-RING-type profile. 348 431 IPR004181 GO:0008270
Tpr4g1727 879 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 809 - -
Tpr4g1727 879 Gene3D SAP domain 1 62 IPR036361 -
Tpr4g1727 879 SUPERFAMILY FYVE/PHD zinc finger 107 171 IPR011011 -
Tpr4g1727 879 CDD SP-RING_Siz_plant 362 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1727 Tpr-Chr4 17783658 17795798 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g1727 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1727 - - aprc:113857557 1465.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1727 4 17783658 17795798 Tpr4g1727 4 17783658 17795798 ECH
Tpr7g4355 7 52322797 52333507 Tpr4g1727 4 17783658 17795798 PCT