Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1723 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGACAAGAATGTATTGTGCATTAAGGAATGTGAAAAAGGTTGTTGTTTGTCCCCTTCAAATTGTTCTTCAACTTCACCACTTGTTTGTTCTTCTTATCTTGAACTTTGGCATGCTTGTGCTGGCCCTCTTATTTCACTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCACTTGGAACAATTTGCTTCTTTTTCTCCTTTTAAACAATTGGAGATACCAACCTATGATCTTCAGCCTCAGATCTTTTGCAGGGTTGTCAATATTCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTTGCAGGGTTGCATACGGAAGGAAAAGAAGTTGAGGAATTAGAAGGCGACGAAGAGGGAGATGAAGGGTCAACTACAAAATCAACCCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCACCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGATCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGAGTGAAAATGGAGAGCTGAGATTAGGAATCAGAAGAGCTATTAGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGAAACCAGAACTGTTATCCCAATTTTCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTGTTCCATATCAAAAATATGTTAAAAGCATCAAGAATCCAATGACCATAGGGACAAGATTCAAAATGAGATTCGAAACGGATGAATCGCCAGAAAGAAGAAGTAGTACTGGTATGTTGATTGGAATGAATGACTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAAACTAATCATCAAGACCGAGTATCTCCGTGGGAGATTGATCCATCTTCTCCTCTACCTCCCCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCGGTCTGCAGGTTTCCTCGCCCAATCACCTCATCACTGGTATGAATCCTAATGCAGGAAGCAGTGGAATGACGGGGTTTGAGGAATCTATAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTATGTCACTATACTATGGAAGTGACAAAAAAACAACACACCAGCTAGGTTTTGAGTTGAGCTCTTCAAGTCATCATCATCAAAACCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCATCCTTTCAGTTATGCAGGCTTTATGGAAAATAACAATTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAGCTGAAATCGATTACAGGAAAAGTTGATTTCAATATTGGTTCTTGGGGAACCAAACCCAATTTTCAATCTGCTTATTTTCCTTTTGGAGATATTCACAAAGATAATCAAGTTAACATGTTTAGCTCAAAACACACAACTTTCCTAAGCGATAATGTTGCGTTTAACACACCGACAACATTGGCAGCAAACATCAGAAAAGAAGTTGCAAATGAGCATAAGCTGCAGGACGATATAACTAATGCTGCTTCATTAGGGGCTACTAATATAAATGTTGCAAATGATAACAATGTGAAGGGAAAGGTAAATTCCTGCAAATTATTCGGGTTTCCTTTGTCTGGCGAAACTAGTAGCCAGAACACGGCAAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTCGGAAGAGCCATTGATCTGTCAAGGTTGAGCGGCTACATCGATCTTCTAAGTGAACTAGAGAAACTATTTGGAATGGAAGGCCTTCTTAGAGATTCTAATAAAGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGAATGACAAATGATGATACTCATAGCTGTTTGGAACAAGCACCAGTGACTATGGAACCTTCTAAATCATCCTCAGTTGGTCAGCCAGATTATTCTCCAAAAGTAGTTAGAGTCTAA 2328 0.4025 MEIDLNHEVTEIDKNVLCIKECEKGCCLSPSNCSSTSPLVCSSYLELWHACAGPLISLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEFAGLHTEGKEVEELEGDEEGDEGSTTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRSENGELRLGIRRAIRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMRFETDESPERRSSTGMLIGMNDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSSPLPPLSIQSSPRLKKPRTGLQVSSPNHLITGMNPNAGSSGMTGFEESIRSPKVLQGQENAGFMSLYYGSDKKTTHQLGFELSSSSHHHQNLASTGIGKVVTSSELMSVHPFSYAGFMENNNFPRVLQGQEICKLKSITGKVDFNIGSWGTKPNFQSAYFPFGDIHKDNQVNMFSSKHTTFLSDNVAFNTPTTLAANIRKEVANEHKLQDDITNAASLGATNINVANDNNVKGKVNSCKLFGFPLSGETSSQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYIDLLSELEKLFGMEGLLRDSNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMTNDDTHSCLEQAPVTMEPSKSSSVGQPDYSPKVVRV* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1723 775 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Tpr4g1723 775 SMART B3_2 158 260 IPR003340 GO:0003677
Tpr4g1723 775 MobiDBLite consensus disorder prediction 753 767 - -
Tpr4g1723 775 SUPERFAMILY DNA-binding pseudobarrel domain 150 269 IPR015300 -
Tpr4g1723 775 Gene3D - 322 393 - -
Tpr4g1723 775 PANTHER AUXIN RESPONSE FACTOR 26 763 - -
Tpr4g1723 775 MobiDBLite consensus disorder prediction 753 775 - -
Tpr4g1723 775 ProSiteProfiles PB1 domain profile. 647 729 IPR000270 GO:0005515
Tpr4g1723 775 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 763 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g1723 775 Pfam AUX/IAA family 640 731 IPR033389 -
Tpr4g1723 775 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Tpr4g1723 775 MobiDBLite consensus disorder prediction 135 154 - -
Tpr4g1723 775 Gene3D - 156 260 IPR015300 -
Tpr4g1723 775 Gene3D - 642 736 - -
Tpr4g1723 775 MobiDBLite consensus disorder prediction 393 425 - -
Tpr4g1723 775 CDD B3_DNA 156 258 IPR003340 GO:0003677
Tpr4g1723 775 SUPERFAMILY CAD & PB1 domains 647 726 - -
Tpr4g1723 775 MobiDBLite consensus disorder prediction 381 425 - -
Tpr4g1723 775 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1723 Tpr-Chr4 17759407 17765169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1723 42 775 B3 DNA Binding Superfamily AT5G60450 60.425 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g1723 B3 6.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1723 - - gmx:100783513 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1723 4 17759407 17765169 Tpr4g1723 4 17759407 17765169 ECH
Tpr7g4356 7 52335326 52341443 Tpr4g1723 4 17759407 17765169 PCT