Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1720 ATGATGTCTAAACAACCATTTTCAGTTTCATGTCATTCAAACACCATGAAAGCTTCTTCATCAAATCATGTTCAACAATCAAACTCAAACCCTAATCCAAACCTACCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCAGATTCAGAAGTGGTAGCTATGTCACCAAAGTCATTGATGGCGACAAATCGTTTCTTATGCGAAATATGCAACAAAGGTTTCCAAAGAGACCAGAATTTGCAACTTCATCGACGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGCCAACAAAGATCAAATTAAAAAGAAGGTTTATGTGTGTCCAGAGAAGAGCTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTACAGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAAAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACTAGAGAATACAAATGTGATTGTGGCACCATTTTTTCCAGGAAGGACAGTTTCATAACACATAGAGCTTTCTGTGATGCATTGACTGAAGAAAGTGGAAAGATAACAACAGTTCCAACAGCTTTAAGCAACTTTAGAAATCATCATTTGACAAATACTCATCAAACTCCAAGAATCCCTCAAATTTTTCCTGGTTTTCAGTTTCACTCAGATTTTGTCAATTCAGCAACATCATCAATATGGCAACATCATCAAAATTCTGATATGATGCAAACAATGGATGTGTTTGGATCACAAACACAAACACAGAATCAACAATGGTTGAATAATTATAGTAATAATCTATCATTACCAATGTTACATGGAGTAATGAAACAAGAACAAGAACAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGTTCATTGTACTTAAGTAATAGTCAGAATCAACAAGGAGGATCAAATCACATGTCAGCAACTTCACTGTTACAGAAAGCATCTCAAATTGGATCTACAAGGACAATTATTAGCAATGATAACAACAATGTCTTCAACAATGTGAACAACTTTAACATTGTTCATGATGTTGAGAAATTTTATAACAAGCAAGATGAAAATGGAGAGTTGAATGAGTTGGTAAATTTAGGAGGAAGTAGTGGAACTAATATTGAAGGTGGTGAGTATTTATTTAATGATTCAAATTCAAATAATTTGTTTGGGATTGTGAATGGTACAAAGGATTTGGATCATGTGGTAAAAGAGAAAAATCAAATGGGTTTAACAAGAGATTTTCTTGGGGTTGGTGATGATGATGATGATGATTCAATGAGTAGACCTTTTTTACAGCATGAAGTACTTGGTGAATTTAATGGAATGGGATCATTGGGAAATAATTTGCAGAGTCATTATGGTGGTGGAAACTATTGTTAG 1434 0.3438 MMSKQPFSVSCHSNTMKASSSNHVQQSNSNPNPNLPKKKRNLPGTPDPDSEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIKKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEESGKITTVPTALSNFRNHHLTNTHQTPRIPQIFPGFQFHSDFVNSATSSIWQHHQNSDMMQTMDVFGSQTQTQNQQWLNNYSNNLSLPMLHGVMKQEQEQEENKDLSHSVISSLYLSNSQNQQGGSNHMSATSLLQKASQIGSTRTIISNDNNNVFNNVNNFNIVHDVEKFYNKQDENGELNELVNLGGSSGTNIEGGEYLFNDSNSNNLFGIVNGTKDLDHVVKEKNQMGLTRDFLGVGDDDDDDSMSRPFLQHEVLGEFNGMGSLGNNLQSHYGGGNYC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1720 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 443 - -
Tpr4g1720 477 MobiDBLite consensus disorder prediction 1 51 - -
Tpr4g1720 477 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 14 443 - -
Tpr4g1720 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Tpr4g1720 477 MobiDBLite consensus disorder prediction 1 36 - -
Tpr4g1720 477 SMART c2h2final6 143 163 IPR013087 -
Tpr4g1720 477 SMART c2h2final6 66 88 IPR013087 -
Tpr4g1720 477 SMART c2h2final6 108 138 IPR013087 -
Tpr4g1720 477 Gene3D Classic Zinc Finger 122 200 - -
Tpr4g1720 477 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Tpr4g1720 477 Gene3D Classic Zinc Finger 45 121 - -
Tpr4g1720 477 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1720 Tpr-Chr4 17719999 17722657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1720 37 461 IDZ Gene Family AT5G03150 44.191 2.89e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g1720 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1720 K25870 - gmx:100817691 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4363 7 52374198 52377178 Tpr4g1720 4 17719999 17722657 PCT