Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1711 ATGGCTTCCTCAAATAATTCCATAGCTAAAAACAACAAGAAAACAAAAAAACCACAAACCTCAACACCTACTAGTAAAATCAAAAAGGAAAAATCCATACAAAAATCCAAAGAGAAGAAGAAGAACGAAGAGAACAACAACAACAAGAATAATAAGAATAAGAAGAAGCTGAATTTCACAAATGGAAATTCCAAAGAAAAACAAGTCAATGGAAAGAAACATCATAAGAACAACAACGACGATGACGAAAATGAAGAAGCAGCGAAAACGAACGTGTTTCCAATGAGTCGAATCAGAACGATTTTAAAAGGAGAAATTACCGATTTGCGTGTTTCTCAGGAAGCTGTATTGGCTATTAACAATGCTGCGGAGAAGTTTCTTGAACAATTGGCGGAGGAAGCTTATGTTTACTCTGTTCAGGATCGTAAGAAATATCTGAGTTACAATCATTTATCACGTGTTGTCAGTAAGCAAAGTAGATACGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAAACTTAAGAGGAAATAGAGGAGGTTAG 570 0.3544 MASSNNSIAKNNKKTKKPQTSTPTSKIKKEKSIQKSKEKKKNEENNNNKNNKNKKKLNFTNGNSKEKQVNGKKHHKNNNDDDENEEAAKTNVFPMSRIRTILKGEITDLRVSQEAVLAINNAAEKFLEQLAEEAYVYSVQDRKKYLSYNHLSRVVSKQSRYDFLSDFVPEKVKAEDALRETNLRGNRGG* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1711 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 155 IPR003958 -
Tpr4g1711 189 SUPERFAMILY Histone-fold 77 169 IPR009072 GO:0046982
Tpr4g1711 189 MobiDBLite consensus disorder prediction 1 27 - -
Tpr4g1711 189 MobiDBLite consensus disorder prediction 28 51 - -
Tpr4g1711 189 MobiDBLite consensus disorder prediction 1 91 - -
Tpr4g1711 189 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 183 - -
Tpr4g1711 189 MobiDBLite consensus disorder prediction 73 88 - -
Tpr4g1711 189 Coils Coil 26 55 - -
Tpr4g1711 189 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 8 183 - -
Tpr4g1711 189 MobiDBLite consensus disorder prediction 52 66 - -
Tpr4g1711 189 Gene3D Histone, subunit A 77 170 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1711 73 154 CCAAT-HAP5 Transcription Factor Family AT1G07980 42.683 2.84e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr4g1711 CBFD_NFYB_HMF 4e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1711 - K03506 lja:Lj3g3v3086110.3 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1711 4 17658932 17662059 Tpr4g1711 4 17658932 17662059 ECH