Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1703 ATGAGTTCTCAACCAAATAAACATGTCACTCAGAAAGAACATGATGCTGATGATACCATTTCTTGCAGAACAACAGTTTCTCTTCCTGTTGTTCATAAGGATGATGATGATGATGATCCAATCGGGATAACCGAAGAAACCGCGCATGTTCCTCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAATGTTCACAAGATTTTGTTTCAATCAAAATGCCAATGACACCGAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTAATGACTTCTCGCTCGGTCGATGCTCCGATAAATAATTCTCCTGGATCAGCATCATCAAAAGGCAAATCATCCATAAGAAACTTGCTACCAAAATTGAGCTTTCGGTATAGGACAGCAGCAGCAGATATTGAAAAGGCGAATACGCCAACTCCGGAAGTTTCCTCTTCAGGTCATCGAGAAAAGCCTTCGATCTCAAGATCATTGTCCCTTAGTAAAATATTTACTCCTAGGATGAAACGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAACCCCGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAACAACAACAAAGACAAAAGTATAAGGAGGATGGATTCATTTTTCCGTGTGGTGCCTTCTACTCCTCGAGTAAAGGAAATAAATGAATTGTTGAGCACGTCCCCGACAAAGGATACTGAAGACGAAGATTCTGATGGCGGTGAAGATATACCTGAAGAGGAGGCAGTGTGTAGAATCTGTTTGGATGAATTATGTGAAGGAGGCGAGACATTCAAATTGGAATGTAGCTGTAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCGATTAAATGGTTTAGTATAAAGGGTAACAAGACATGTGATGTCTGCAAAAATGAAGTTACAAACCTTCCAGTCACTCTATTACGGATCCAAAGTGCTCGAAATCGAATTAATGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGTACAGGGTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGGCCTATTTTTGTTTTCTTGAGCAACTATTGGTTACAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCTTGTGTACTTGGTCTTCTCTCCTCCATGACATCGTCAACCATGGTGATGAGCAGGTTCATATGGATTTATGCATCTTGCCAGTTTGCTATGGTGGTTCTTTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTTTCGATCCTTCTTGCAACATTTGCTGGATTTGGTGTGGTAATGAGTGGAAGTTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCAGAGCAGCAACATGGCCCTCTACCGATAACACAAGCAGAACCGCATCCACAAACTGTAAACACACCATGTTCGGACCAATCCAACCATAGTCATCCCGTAGCTCAAGATCTGCAAAACTCACATCAGAGCTGA 1584 0.4211 MSSQPNKHVTQKEHDADDTISCRTTVSLPVVHKDDDDDDPIGITEETAHVPPRKKQNLLLEIPSRTPEECSQDFVSIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPINNSPGSASSKGKSSIRNLLPKLSFRYRTAAADIEKANTPTPEVSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPLEEIGHSNPESTHGGNGSVGGPLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINELLSTSPTKDTEDEDSDGGEDIPEEEAVCRICLDELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKNEVTNLPVTLLRIQSARNRINGTSRAQLEDINGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASCQFAMVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPLPITQAEPHPQTVNTPCSDQSNHSHPVAQDLQNSHQS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1703 527 MobiDBLite consensus disorder prediction 248 271 - -
Tpr4g1703 527 ProSiteProfiles Zinc finger RING-CH-type profile. 271 333 IPR011016 GO:0008270
Tpr4g1703 527 MobiDBLite consensus disorder prediction 139 211 - -
Tpr4g1703 527 MobiDBLite consensus disorder prediction 183 200 - -
Tpr4g1703 527 MobiDBLite consensus disorder prediction 486 527 - -
Tpr4g1703 527 Pfam RING-variant domain 279 326 IPR011016 GO:0008270
Tpr4g1703 527 MobiDBLite consensus disorder prediction 1 23 - -
Tpr4g1703 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 334 IPR013083 -
Tpr4g1703 527 PANTHER OS02G0165000 PROTEIN 33 499 - -
Tpr4g1703 527 MobiDBLite consensus disorder prediction 145 175 - -
Tpr4g1703 527 SMART ringv_2 278 327 IPR011016 GO:0008270
Tpr4g1703 527 MobiDBLite consensus disorder prediction 102 123 - -
Tpr4g1703 527 CDD RING_CH-C4HC3_MARCH 279 327 - -
Tpr4g1703 527 SUPERFAMILY RING/U-box 275 330 - -
Tpr4g1703 527 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1703 Tpr-Chr4 17543891 17559214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1703 272 382 C3H Transcription Factor Family AT5G05830 33.884 1.37e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1703 - - gmx:100788108 718.383