Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1698 ATGGGCCGCCGCAAAATTGAGATCGAGAGGGTGAAAAACTCCAACACAAGGCAGGTCACATTCTCAAAGCGTCGAACAGGCTTATTCAAGAAAGCAAATGAATTGTCTATTTTATGTGGCGGAGAAGTCGCTATTGTCGTGTTTTCTCCAGGGAATAAGCCATACTCTTTTGGTCACCCAGGAGTTGATGCTGTTGCGGCCAAGTATCTTCAACAAGAGCCTAAACCAAGATACCCCTCTTCTGATGCTTCCAATATGGATGAGCTGAATCTGGAACTTGCTGAGGTGTTGGCTCAAATTCGTGAAGGTGAAAAGCAGGCTGAGACTTATGATGAGATCCTGAAGCAAAATGATGTGACAACACTCTCTAACCTTGAAGAATTGAGATGTGCATATAAAGAGCTTCAAGATTGGATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATATTTGATGTTTCTTGCTAAGGAGCCAGTTGTGGGAGTTAAGGCTAACTCTGCAGAACAAGAGTAG 516 0.4283 MGRRKIEIERVKNSNTRQVTFSKRRTGLFKKANELSILCGGEVAIVVFSPGNKPYSFGHPGVDAVAAKYLQQEPKPRYPSSDASNMDELNLELAEVLAQIREGEKQAETYDEILKQNDVTTLSNLEELRCAYKELQDWIKLRLSDIEISEYLMFLAKEPVVGVKANSAEQE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1698 171 PANTHER MADS BOX PROTEIN 2 166 - -
Tpr4g1698 171 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Tpr4g1698 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr4g1698 171 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Tpr4g1698 171 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Tpr4g1698 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g1698 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g1698 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr4g1698 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 166 - -
Tpr4g1698 171 Coils Coil 86 106 - -
Tpr4g1698 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g1698 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1698 Tpr-Chr4 17518193 17520245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1698 1 157 Type I MADS-box Gene Family AT2G34440 39.773 2.13e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g1698 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1698 - - mtr:MTR_1g054265 239.195