Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1685 ATGGCTATGGCTGTGGCTCATCATAGAGAAAGTAGTAGCAGTGGTGGAAGCATTGATAAGCATCTTGATTCAGGAAAATATGTTAGGTACACTTCTGAACAAGTTGAAGCTTTGGAAAGGGTTTATGCTGAGTGTCCTAAACCTAGTTCTATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAAATCAAGGTTTGGTTCCAAAATCGAAGATGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTATCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGATTACAGAAACAAGTGTCACAGCTTGTGTGTGAGAATGGATTTATGAGACAGCAATTGCATACTCCATCAGCAGCAAATACTGATGCAAGTTGTGATTCAGTGGTTACAACTCCTCAGAATTCCAAAAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCACAAAGTGGTAGTGGAGTAGCAGCTCGAGCATGTGGTCTTGTTAGTTTAGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGAGAATGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCGTTGAGCTTGTTTACACACAGACATATGCTCCAACAACGCTAGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACTACAACTTTGGAGAACGGTAGTATTGTGGTCTGTGAGAGGTCCCTGTCCGGTTCTGGCACTGGCCCTAATCCGGCTGTTGCTGCTCAGTTTGTAAGGGCCGAAACACTCCCAAGTGGCTACTTGATTCGACCATGCGATGGTGGAGGTTCAATCATCCACATTGTAGACCATTTAAATCTTGAGCCGTGGAGTGTTCCAGAAGTGCTACGGCCACTTTACGAATCACCAAAAGTGGTGGCTCAAAAAATGACCATTGCGGCACTTCGATATATTAGGCAAATAGCTCAGGAATCAAGTGGTGAAGTTGTATATGGATTGGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAATGACGATGGTTGGTCTATACTGAACTGTGATGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAACTTGAGTAGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAACGTTCCTCCTGCAGTTTTGGTTCGCTTTTTAAGGGAGCACCGCTCGGAATGGGCTGATTTCAATGTCGATGCTTATTGTGCCGCATCATTGAAAGCTGGAAACTATGCCTATCCAGGGATGAGGCCTACAAGATTCACAGGCAATCAAATAATCATGCCTCTTGGCCATACTATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAACTGATGAGAATGCTGTTGGGACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGACGCTCCATTGGTACCTTCTGGTTTCCGCATCATACCATTGGATTCAAAACCAGGTGATAAGAAGGATACACCGAATTCAAACCGGACCTTGGATTTGATGACTTCAGGTCTTGAAGTGGGCCCAGCAACAACTCACGGTGGTGCAGATTCATCATCAAGTCAAAACACCCGATCGGTGTTGACTATTGCCTTTCAGTTTCCTTTCGACAGCAATATGCAAAATAATGTTGTAATCATGGCTCGTCAATATGTTCGTAGTGTGATTTCCTCAGTACAAAGGGTTGCCATGGCTATATCACCGTCCGGTATCAACCCAGCTGTTGGTGCAAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACGTTAGCTCACTGGATCTGTCAGAGTTATAGTTACTATTTGGGGTCAGACTTGCTCAGGTCAGATTCTCTAGTCGGCGACTTGATGCTAAAACAGCTGTGGCATCACCCTGACGCCATTCTATGCTGTTCACTGAAGTCTCAGCCAGTTTTCGTGTTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACGTTGGATAAAATATTTGACGAGTCGGGTCGCAAGGCATTATGTGGAGATTTTGCTAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAACTGGGATGTGCATGTCGACGATGGGGCGGCACGTTTCTTACGAGCAAGCCATTTCATGGAAAGTGCTTACAGCAGATGATAATAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2538 0.4377 MAMAVAHHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAANTDASCDSVVTTPQNSKRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSGSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTVELVYTQTYAPTTLAPARDFWTLRYTTTLENGSIVVCERSLSGSGTGPNPAVAAQFVRAETLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSILNCDGAEDVIIAVNSTKNLSSTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYCAASLKAGNYAYPGMRPTRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTPNSNRTLDLMTSGLEVGPATTHGGADSSSSQNTRSVLTIAFQFPFDSNMQNNVVIMARQYVRSVISSVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAHWICQSYSYYLGSDLLRSDSLVGDLMLKQLWHHPDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCGDFAKLMQQGFAYLPTGMCMSTMGRHVSYEQAISWKVLTADDNSVHCLAFSFINWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1685 845 Coils Coil 91 122 - -
Tpr4g1685 845 CDD homeodomain 26 86 IPR001356 GO:0003677
Tpr4g1685 845 Gene3D - 19 92 - -
Tpr4g1685 845 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Tpr4g1685 845 SMART HOX_1 23 89 IPR001356 GO:0003677
Tpr4g1685 845 MobiDBLite consensus disorder prediction 1 20 - -
Tpr4g1685 845 Pfam MEKHLA domain 701 844 IPR013978 -
Tpr4g1685 845 Pfam START domain 165 372 IPR002913 GO:0008289
Tpr4g1685 845 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Tpr4g1685 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 845 IPR044830 GO:0003700
Tpr4g1685 845 SMART START_1 164 374 IPR002913 GO:0008289
Tpr4g1685 845 CDD bZIP 78 117 - -
Tpr4g1685 845 CDD START_ArGLABRA2_like 159 375 - -
Tpr4g1685 845 Gene3D - 200 381 IPR023393 -
Tpr4g1685 845 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Tpr4g1685 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 845 - -
Tpr4g1685 845 SUPERFAMILY Bet v1-like 164 376 - -
Tpr4g1685 845 Pfam Homeodomain 26 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1685 Tpr-Chr4 17407281 17414400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1685 1 845 Homeobox Transcription Factor Family AT5G60690 81.434 0.0 1425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr4g1685 START 8.7e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1685 K09338 - gmx:100804870 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1685 4 17407281 17414400 Tpr4g1685 4 17407281 17414400 ECH