Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1681 ATGAAGGAAACTGAAAAAGGGTACTTGGATCCACAACTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATTCCACAAGTGAATTCCAAAGTTTACTACTTTCCACAAGGTCATGCTGAACATGCTAACACAAACATTGATCTAAGGGTTTCAGTTCCACCACTGATTCTTTGTAAAGTTGTTGCTGTTAAATTCTTGGCTGACCCAGAAAGTGATGAAGTTTTTGCTATCATAAAGCTTCTTCCTTTAAGAAATTCAGAATTTGGTTATGGTGAAGAAAGTTGTGGTGGTGGTGGTGATGGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACTCAGTCTGATGCAAATAATGGTGGGGGGTTTTCTGTTCCGAGATACTGTGCTGAGACGATCTTTCCTCGGCTTGATTATGCGGCTGAGCCGCCTGTTCAGACTGTGGTTGCGAAGGATGTTCACGGCGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACGCCGCGGAGGCACTTGCTTACAACAGGATGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTTGTGTTTCTGAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCTGGTTCAGGTTCTAACAATGGAAATTGTGGAATTGGACCTTTTGGGGCCTTTTCTTTTTTCTTGAAAGAGGAGAATAAGACATCGAGAAATGGTTTTGTCGGTGTTGATGGTAATTTGAGTGGAAGAGTGAGAGTGAGACATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTTGAAGTTGTTTACTATCCAAGAGCAAGCACTCCTGAGTTTTGTGTCAAGGCTTCATCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGAATGAGGTTCAAGATGCCTTTTGAAACTGAGGACTCTTCTAGGATTAGTTGGTTTATGGGAACAGTTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCACCGTGGCGCCTTCTTCAGGTTACATGGGACGAGCCAGATTTACTACAAAACGTGAAGCGCGTTAGTCCGTGGTTGGTTGAATTAGTTTCAAACGTACCAGTCATTCATTTCTCACCGTTTACTCCACCGAGGAAGAAGCTGCGGTTTCCACAAAACCTAGACTTCCCCCTCGACGTTCATTTTCCATCACCGACGTTTTCAGGCAACCAGCTCGGGCTAAACAGCCCTTTGTTTGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGTTGTTTCCTACTAATATACAGCACCTTGATGTGCGTAATAGGATTTCAAATGGTAACAACATGATGACCGACAACGATAAGAATAAAGAAAGCTTATCATGCTTGTTGACCATAGGGAAAAAGTCTGATAAGAGTTTGGAGAAATCTCAATCTGATGATGATGTTGTTAAGAAACATCAGTTTTGTCTTTTTGGTCAACCAATACTCACCGAACAACAAATTTCTAGAAATTGTTCTGAAAAAGATTTAGTAGATGAGAGTAAGGACAAAGAGAAGTGGTTTTTGGATGCATTTTCAGCAGGAAAAGGTTCTGATGCTACCGAGTTTAGTTGGCAACTTGGTTTGGATATTGGTCATTGTAAGGTTTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGATTTATCACTTCTTGGTTCTTATGAAGAACTCTACAAGAAACTGGCTAACATGTTTGATTTAGAAAAATCTGAGATGTTGAATCGTGTGTTCTACCGTGATGCAACAGGTGCTGTGAAGCAAACTGGTGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGGGGCTTGGATTACAGGAACTCACAAGGGTGAACATGGATTGAATGCCTCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA 2109 0.4158 MKETEKGYLDPQLWHACAGGMVQIPQVNSKVYYFPQGHAEHANTNIDLRVSVPPLILCKVVAVKFLADPESDEVFAIIKLLPLRNSEFGYGEESCGGGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCGIGPFGAFSFFLKEENKTSRNGFVGVDGNLSGRVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPQNLDFPLDVHFPSPTFSGNQLGLNSPLFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHLDVRNRISNGNNMMTDNDKNKESLSCLLTIGKKSDKSLEKSQSDDDVVKKHQFCLFGQPILTEQQISRNCSEKDLVDESKDKEKWFLDAFSAGKGSDATEFSWQLGLDIGHCKVFMESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNRVFYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNVRGAWITGTHKGEHGLNASNKTGPLSIFA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1681 702 SMART B3_2 111 213 IPR003340 GO:0003677
Tpr4g1681 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Tpr4g1681 702 Gene3D - 320 393 - -
Tpr4g1681 702 PANTHER AUXIN RESPONSE FACTOR 2 679 - -
Tpr4g1681 702 Gene3D - 590 675 - -
Tpr4g1681 702 Gene3D - 109 213 IPR015300 -
Tpr4g1681 702 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Tpr4g1681 702 CDD B3_DNA 110 211 IPR003340 GO:0003677
Tpr4g1681 702 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr4g1681 702 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Tpr4g1681 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g1681 702 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1681 Tpr-Chr4 17362216 17366598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1681 4 674 B3 DNA Binding Superfamily AT4G30080 56.772 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g1681 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1681 - - gmx:100814686 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1681 4 17362216 17366598 Tpr4g1681 4 17362216 17366598 ECH
Tpr1g3954 1 44078388 44083922 Tpr4g1681 4 17362216 17366598 ECH
Tpr7g4390 7 52664063 52668440 Tpr4g1681 4 17362216 17366598 PCT