Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1680 ATGAAGAACAATTGGTTTTTTGACAGCAATTGTAATGGTGTGTCGGATGAGATTCTTGAAGATGTTGTTGATTTTTTTGATTTCCCAGATGAAGATGTGGAAACTGATGATGGGGAACATGATTGGAATGATAAATTCAAACACCTTGAAGAGCCATCTCTTGGGATTTTTTCGGTATCATCAACTGAGCTGCATGGCAAAACAAAACCTGTGAACAATTTTGCTGCTGCTGAACTTTCTCATATTGACAGAAGAAATATTGTTAATCCAAGCTTAAAAGGTCAACAAGCACTACTAAGAAAGGCCGCTAGACCAGCATATACCAAAACTCTTCCTATCCAAATGGTCTCTTTCAATGGAACAAATTTGCGAAAATGCCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAGTGATCCCGGCAAAGCGTCCTCGCAGTAAACGCCAGCGTCTCTCAAGCTTTGACAAGCTCTTCACAATTCCATTTATCTCTACTCCACCTGCTTTTCAAAAATATCAATTGGCGAAACAGTGTGCTGGCAAATCATCAAGCAAAGTACAAAGAAAGCTGGGCAAAAAGGATATCTCCTCACTCTCTGACGGTATTGAGATGAAGAGATCCGCATTACAAGATTCAGCTACCCCCACAAAATGTATGCATTGCGAGGTAACTGAGACACCACAATGGAGAGAGGGGCCTAAGGGTCCAAGGACCCTATGCAACGCTTGTGGAGTTCGATACAGGTCTGGTCGCCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCAACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAACAAGGATAATGCTAATATGAAGAGCAATTGGTTTTTTGACAACAATTTTAACGGTGTGTCGGATGAGATTCTTGAAGATGTTGTTGAGTTTTTTGATTTCCCACATGAAGATGTGGAAACTGATGCCGTGGAACATGATTTGAATGATCAATTCAAACACCTTGAAGAGCCATCTCTTGGGATTTTTTCGGTACCATCATCTGAGCTGTATGGCGAAACTCAAAATGAGAAACCAAATTCTATCAACAATTTTGCTGCTGCTGAACTTTCTCATATTGACAGAAAAAATAATGTTAATGCAAGCTTAAAAGATCAACAAGCACTGGCCGCTACCAAAACTATGGTTATCCAAATGGTCTCTTTCAATGGAACAAATTTGCGAAAATGCCAAACCTATAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAGTGATCCCGGCAAAGCGTCCTCGCAATAAACTCCAGCATCTCTCAAGTGCTTTTCAAAAACATCAATTGGCGAAACAGTGTGCTGGCAAATCATCAAGCAAAGTCCAGAGAAAGCCGAGCAAAAAGGATATCTCCTCACTCTCTAACGGTATTGAGATGAAGAGATCCGCATTACAAGATTCAGCTACCCCCACAAAATGTATGCATTGTGAGGTAACTGAGACACCACAATGGAGAGAGGGGCCTAAGGGTTCAAGGACCCTATGCAACGCTTGTGGAGTTCGATACAGGTCTGGTCGCCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCAACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAACAAGGTTAGCTAG 1749 0.4174 MKNNWFFDSNCNGVSDEILEDVVDFFDFPDEDVETDDGEHDWNDKFKHLEEPSLGIFSVSSTELHGKTKPVNNFAAAELSHIDRRNIVNPSLKGQQALLRKAARPAYTKTLPIQMVSFNGTNLRKCQTYSPVSVFESSSYSSVENFNFELPVIPAKRPRSKRQRLSSFDKLFTIPFISTPPAFQKYQLAKQCAGKSSSKVQRKLGKKDISSLSDGIEMKRSALQDSATPTKCMHCEVTETPQWREGPKGPRTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRNKDNANMKSNWFFDNNFNGVSDEILEDVVEFFDFPHEDVETDAVEHDLNDQFKHLEEPSLGIFSVPSSELYGETQNEKPNSINNFAAAELSHIDRKNNVNASLKDQQALAATKTMVIQMVSFNGTNLRKCQTYSPVSVFESSSYSSVENFNFELPVIPAKRPRNKLQHLSSAFQKHQLAKQCAGKSSSKVQRKPSKKDISSLSNGIEMKRSALQDSATPTKCMHCEVTETPQWREGPKGSRTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRNKVS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1680 582 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 Pfam GATA zinc finger 516 549 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 20 297 - -
Tpr4g1680 582 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 320 580 - -
Tpr4g1680 582 Gene3D - 507 576 IPR013088 GO:0006355|GO:0008270
Tpr4g1680 582 Gene3D - 223 300 IPR013088 GO:0006355|GO:0008270
Tpr4g1680 582 ProSiteProfiles GATA-type zinc finger domain profile. 226 262 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 ProSiteProfiles GATA-type zinc finger domain profile. 510 546 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 512 573 - -
Tpr4g1680 582 CDD ZnF_GATA 515 562 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 289 - -
Tpr4g1680 582 CDD ZnF_GATA 231 278 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 ProSitePatterns GATA-type zinc finger domain. 516 541 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 SMART GATA_3 510 560 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
Tpr4g1680 582 PANTHER GATA TRANSCRIPTION FACTOR 20 297 - -
Tpr4g1680 582 PANTHER GATA TRANSCRIPTION FACTOR 320 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1680 Tpr-Chr4 17346943 17354278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1680 304 580 C2C2-Gata Transcription Factor Family AT1G08010 34.680 7.02e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr4g1680 GATA 1.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1680 - - mtr:MTR_4g058910 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1680 4 17346943 17354278 Tpr4g1680 4 17346943 17354278 ECH
Tpr7g4392 7 52685740 52690100 Tpr4g1680 4 17346943 17354278 PCT