LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g1671	ATGCTAGATAGTAATCCAATCCTCATTAGCACTAAATTTGTTTTATGTGACATGGCTTCAGAAGGTGATCTTGAATTAGCTAAACTCAATGGAAAACAAGTAGCTCCTAGAATATTGTCAAGAGTGTTCTCAGAAGATTACAAGAGAGTGAGAAGAAGAAGAATATTAGATCCTAGGGGACAAATCATTCACCAATGGAATAAGATTTTCTTAGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCTTTATTCTTTTATTTGCCAATAGTTCAAGATGAAGCGTGCATTGACATTGGAATAGAAATTGAAGTTGTTCTCATAGTTATAAGATCAATTTTGGATGCTTTTTACATCATTCACATTTTTATGAGGTTTCATATAGCTTATGTTGCTCCTTCTTCTAGGGTGTTTGGAAGAGGAGAACTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACTTGCATAAGGGTTTTTTCTTGGACTTTATTGCTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTCATACCTAATCTTGGAGGTTCAACCATTGCAAACACAAAAAATGTCCTTAGATTCATCATCATATTCCAATATTTGCCAAGGCTATTTCTCATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGTGTTGTGACAGAAACAGCATGGGCAGGAGCTGCTTATAACCTGATGCTTTACATGTTAGCTAGTCATGTTTTAGGGGCATGTTGGTATCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAAGAGTGTCTGCAAAATGGAGGAGTCATCTTGTAAATATGATTTTTTTGACTGCAATAGGGTTAAAGATTCCGCGAGGGCGTCCTGGTTTATAGCGAGTAATGTCACAAATTTATGTTCACCAAATGGTCTCTTTTATCAGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAGCCTCTGCATTCTTTAATAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAAGTCTTCTTACTAGTACATTTGTTGGAGAAATAATGTTTGCCATTGTTATTGCAATACTTGGATTGGTTCTTTTTGGATTGCTCATTGGTAATATGCAGACATACCTACAATCAACGACTGTCCGGTTAGAAGAGTGGAGGGTCAAAAGAACAGACACGGAACAATGGATGCATCATAGACAGCTACCTCAAGAACTAAAACAATCCGTGCGTAAATATGATCAATATAAATGGCTAGCTACACGAGGAGTAGATGAAGAATCTCTTCTTAAAGGACTTCCATTGGATCTTCGAAGAGACATTAAGCGTCACCTTTGCCTTGAACTAGTTCGAAGAGTTCCATTTTTTGACACAATGGATGAGAGGATGCTAGACGCGATATGTGAAAGACTAAAGCCAGCACTATGCACAGAGAACACATATCTAGTTCGCGAAGGCGATCCTGTAAACGAGATGCTATTCATAATAAGGGGGCATCTTGATTCCTACACAACCAATGGAGGGCGCACTGGTTTCTTCAACTCATGTCGAATTGGTCCAGGTGATTTTTGTGGTGAGGAGCTTTTGACATGGGCGTTGGATCCACGACCGAGTATGGTAATTCCTACTTCGACTCGAACGGTTCAAGCCATATCTGAAGTAGAAGGCTTTGCACTTATAGCAGAAGATTTGAAGTTTGTTGCATCTCAGTTTAGAAGATTGCATAGCAAGCAATTGAGGAACAAGTTAAGGTTTCACTCACACCAATGGAGAACATGGGCTGCTTGTTTTATACAAGTTGCATGGAGAGTAAGGTACAAGAAAAGAAAGGTAGTTATTGAGTTGAGGACCAATGTTGAATATGACTCATATTTACTGATAAATGCAACATTTCTTGAGTGTAGTGATTTCAGAAGTAAACTTGTAACAGCCACTCTAATGTCGGAGTGGTAG	1962	0.3848	MLDSNPILISTKFVLCDMASEGDLELAKLNGKQVAPRILSRVFSEDYKRVRRRRILDPRGQIIHQWNKIFLVACLVSLFVDPLFFYLPIVQDEACIDIGIEIEVVLIVIRSILDAFYIIHIFMRFHIAYVAPSSRVFGRGELVIDSSKIATRYLHKGFFLDFIAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCKMEESSCKYDFFDCNRVKDSARASWFIASNVTNLCSPNGLFYQFGIYGDAVTSKVTASAFFNKYFFCLWWGLRNLSSLGQSLLTSTFVGEIMFAIVIAILGLVLFGLLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELKQSVRKYDQYKWLATRGVDEESLLKGLPLDLRRDIKRHLCLELVRRVPFFDTMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSMVIPTSTRTVQAISEVEGFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQVAWRVRYKKRKVVIELRTNVEYDSYLLINATFLECSDFRSKLVTATLMSEW*	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g1671	653	Gene3D	Helix hairpin bin	385	449	-	-
	Tpr4g1671	653	PANTHER	PROTEIN CNGC15A	23	626	-	-
	Tpr4g1671	653	Gene3D	Jelly Rolls	456	576	IPR014710	-
	Tpr4g1671	653	SUPERFAMILY	cAMP-binding domain-like	388	586	IPR018490	-
	Tpr4g1671	653	CDD	CAP_ED	458	589	IPR000595	-
	Tpr4g1671	653	ProSiteProfiles	cAMP/cGMP binding motif profile.	458	555	IPR000595	-
	Tpr4g1671	653	Gene3D	-	68	382	-	-
	Tpr4g1671	653	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	23	626	-	-
	Tpr4g1671	653	Pfam	Ion transport protein	66	385	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Tpr4g1671	653	SUPERFAMILY	Voltage-gated potassium channels	57	380	-	-
	Tpr4g1671	653	SMART	cnmp_10	458	589	IPR000595	-
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	121	130	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	238	248	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	327	344	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	353	364	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	371	380	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr4g1671	653	PRINTS	EAG/ELK/ERG potassium channel family signature	421	428	IPR003938	GO:0005249\|GO:0006813\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g1671	Tpr-Chr4	17246805	17250726	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g1671	30	624	Ion Channels	AT2G28260	76.471	0.0	976

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g1671	K05391		-	gmx:100791992	1005.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g1671	4	17246805	17250726	Tpr4g1671	4	17246805	17250726	ECH
	Tpr7g4399	7	52769436	52774047	Tpr4g1671	4	17246805	17250726	PCT